PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002102.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 368aa MW: 42369.1 Da PI: 8.408

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002102.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cg + s ks+ +Hi +H PCP002102.1 20 YYCDYCGICRSKKSLIASHILSH 42 89*******************96 PP
2	zf-C2H2	19.3	3e-06	65	86	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg F+ + +Lk+H+++H PCP002102.1 65 TCEECGAAFKKPAHLKQHLQSH 86 6*******************99 PP
3	zf-C2H2	16.2	3e-05	92	116	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H PCP002102.1 92 YICSvdDCHSSYRRKDHLTRHLLQH 116 89*******************9887 PP
4	zf-C2H2	10.8	0.0016	121	146	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+ F + n krH + H PCP002102.1 121 FECPveNCNIKFVFQGNIKRHVNErH 146 89*******************99888 PP
5	zf-C2H2	15.9	3.6e-05	161	185	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ s L++H +H PCP002102.1 161 HVCQeiGCGKAFRYASRLRKHEESH 185 79*******************9988 PP
6	zf-C2H2	17.4	1.2e-05	252	276	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F++ksnL +H r H PCP002102.1 252 KCDykGCLRMFTTKSNLSKHVRAvH 276 688889***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MDKGAGEKKE GPVVIDIRRY YCDYCGICRS KKSLIASHIL SHHKGEMEMA DGDGGGEVGE 60 ENSNTCEECG AAFKKPAHLK QHLQSHSLER PYICSVDDCH SSYRRKDHLT RHLLQHQGKL 120 FECPVENCNI KFVFQGNIKR HVNERHTEDC PSADCGAQKQ HVCQEIGCGK AFRYASRLRK 180 HEESHVKLDT VEAFCFEPGC MKHFTNEQCL KVHIQSCHQH ATCKICGVKQ LRNNMKRHLL 240 THEGRGSIER IKCDYKGCLR MFTTKSNLSK HVRAVHLEHK PFVCCFSGCG MRFAYKHVRD 300 NHEKTGCHVY THGDFEEADE QFRSRPRGGR RRQCPDIPML VRKRVTLPNR SAQESEYLSW 360 LRSQEDSD

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MDKGAGEKKE GPVVIDIRRY YCDYCGICRS KKSLIASHIL SHHKGEMEMA DGDGGGEVGE  60
ENSNTCEECG AAFKKPAHLK QHLQSHSLER PYICSVDDCH SSYRRKDHLT RHLLQHQGKL  120
FECPVENCNI KFVFQGNIKR HVNERHTEDC PSADCGAQKQ HVCQEIGCGK AFRYASRLRK  180
HEESHVKLDT VEAFCFEPGC MKHFTNEQCL KVHIQSCHQH ATCKICGVKQ LRNNMKRHLL  240
THEGRGSIER IKCDYKGCLR MFTTKSNLSK HVRAVHLEHK PFVCCFSGCG MRFAYKHVRD  300
NHEKTGCHVY THGDFEEADE QFRSRPRGGR RRQCPDIPML VRKRVTLPNR SAQESEYLSW  360
LRSQEDSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-128	C2H2 family protein