PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001858.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 435aa MW: 50336.3 Da PI: 6.6766

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001858.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.9	2.1e-26	110	204	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d PCP001858.1 110 KWTDQMVKLLITAVSYIGEDTSSDCggggrrkysvlQKKGKWKSVSKVMAERSYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 204 7********************9888999999999********************************************5588888887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MVPGGASYGG LDLQGSMRGH QQPQHPQTIH HHHPQPRQGS LVHPPIPEGF PLKMGTMHHC 60 DQTISMLDYN KGERCKNSAS DEDEPSYVEE GDGHAEASRG KKGSPWQRVK WTDQMVKLLI 120 TAVSYIGEDT SSDCGGGGRR KYSVLQKKGK WKSVSKVMAE RSYRVSPQQC EDKFNDLNKR 180 YKKLNDMLGR GTSCQVVENP ALLDVIKYLT EKEKDDVRKI LSSKHLFYEE MCSYHNGNRL 240 HLPHDPALQK SLHRALKRDD LDNDDLRRHH HDDLDEDDQD MENEEHDDFE ENNALRGDNR 300 GIYISEDSVK RLRQGQGCED FNFGSSLNSQ DCNKSSYFHP QIPQPDMNQV LPDGTKAAWL 360 QKQWAESCSF QLEEQKLQIQ VEMLELEKQR LKWQRFSKKR DRELEKMRME NERMKLENER 420 MALELKQKEM GAGFS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MVPGGASYGG LDLQGSMRGH QQPQHPQTIH HHHPQPRQGS LVHPPIPEGF PLKMGTMHHC  60
DQTISMLDYN KGERCKNSAS DEDEPSYVEE GDGHAEASRG KKGSPWQRVK WTDQMVKLLI  120
TAVSYIGEDT SSDCGGGGRR KYSVLQKKGK WKSVSKVMAE RSYRVSPQQC EDKFNDLNKR  180
YKKLNDMLGR GTSCQVVENP ALLDVIKYLT EKEKDDVRKI LSSKHLFYEE MCSYHNGNRL  240
HLPHDPALQK SLHRALKRDD LDNDDLRRHH HDDLDEDDQD MENEEHDDFE ENNALRGDNR  300
GIYISEDSVK RLRQGQGCED FNFGSSLNSQ DCNKSSYFHP QIPQPDMNQV LPDGTKAAWL  360
QKQWAESCSF QLEEQKLQIQ VEMLELEKQR LKWQRFSKKR DRELEKMRME NERMKLENER  420
MALELKQKEM GAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-155	Trihelix family protein