PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001856.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 549aa MW: 62478.3 Da PI: 9.2805

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001856.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.5	3.6e-28	52	136	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r+++lk+plWe+vs+k+ e g+ rs+k+Ckek+en+ k+++++keg++k+ ++ +t+++fd+lea PCP001856.1 52 RWPRQETVALLKIRSQMDAAFRDSSLKAPLWEDVSRKLDELGYYRSAKKCKEKFENVYKYHRRTKEGRSKK--QEGKTYRFFDELEA 136 8******************************************************************97..55557****985 PP
2	trihelix	101.4	7.3e-32	394	478	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r++++ +++++ k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+k ++k r se+s+tcpyf+ql+ PCP001856.1 394 RWPRVEVEALINLRTYLDVKYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKEKWENINKYYKKVKVSSKTR-SEDSKTCPYFHQLD 478 8******************************************************************98.89999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MLASSGRSSG GEAGTMAEVV REGRQESETT DVLSNSVQEG NKGHRSLYGG NRWPRQETVA 60 LLKIRSQMDA AFRDSSLKAP LWEDVSRKLD ELGYYRSAKK CKEKFENVYK YHRRTKEGRS 120 KKQEGKTYRF FDELEAFDHQ NHHHSSTIIP AKPQVVLWPT MNNNHPNNPS LVVPHVTTTT 180 LPLSSTPSIM APANGSLPNC PQISPPHITK SPLNLSQQNI NGFKPNSATN NLFLSSTSSS 240 ASDKEFQVQP RDKRKMKWKY FFRRLTKDVL EKQEKLQEKF LEAIAKCEHQ RMVREAAWRK 300 EEMARMSKEH EILAQERSLA AAQDAAVIEF LQKFLGQQNS TNIQALEAPS SRPHPLPVLM 360 PPPLQAPVAV ITSSTFHVPK LNNGESPFPG GSTRWPRVEV EALINLRTYL DVKYQEAGPK 420 GSLWEEISAG MRRLGYNRSA KRCKEKWENI NKYYKKVKVS SKTRSEDSKT CPYFHQLDIL 480 HCKKNNKNNA GHVVKPNAET MQPLINVQPD QPAIEDIERE NGDRNEDNED GESTEEEDRN 540 DDQMEMVTN

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MLASSGRSSG GEAGTMAEVV REGRQESETT DVLSNSVQEG NKGHRSLYGG NRWPRQETVA  60
LLKIRSQMDA AFRDSSLKAP LWEDVSRKLD ELGYYRSAKK CKEKFENVYK YHRRTKEGRS  120
KKQEGKTYRF FDELEAFDHQ NHHHSSTIIP AKPQVVLWPT MNNNHPNNPS LVVPHVTTTT  180
LPLSSTPSIM APANGSLPNC PQISPPHITK SPLNLSQQNI NGFKPNSATN NLFLSSTSSS  240
ASDKEFQVQP RDKRKMKWKY FFRRLTKDVL EKQEKLQEKF LEAIAKCEHQ RMVREAAWRK  300
EEMARMSKEH EILAQERSLA AAQDAAVIEF LQKFLGQQNS TNIQALEAPS SRPHPLPVLM  360
PPPLQAPVAV ITSSTFHVPK LNNGESPFPG GSTRWPRVEV EALINLRTYL DVKYQEAGPK  420
GSLWEEISAG MRRLGYNRSA KRCKEKWENI NKYYKKVKVS SKTRSEDSKT CPYFHQLDIL  480
HCKKNNKNNA GHVVKPNAET MQPLINVQPD QPAIEDIERE NGDRNEDNED GESTEEEDRN  540
DDQMEMVTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-106	Trihelix family protein