PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001343.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 366aa    MW: 40050 Da    PI: 4.6505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001343.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-102903301055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR++iN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  PCP001343.1 290 RKRREKINERLRVLQGLIPNG-----TKVDISTMLEEAVHYVKFLQ 330
                  9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MEHIEAVSEG EWTSLSGMYI AEEVDFMSQL LGNFSNQTSS MGITPDAFWS DGNYEGSNYY  60
SSETSYSNSL EGNFSGGNRT FYPTSSSESY YLSESSHPML VTNNSKISMS IDFGAGDVIK  120
TLNSSLIEGD HDQCLNQETS DGNAEESGGN PAEAVALGNQ RFDMTAAKEQ SMEDINPTKN  180
SLKISQSLEN VQMKKRNIKA KKSRQVTTSN NEEDGNAAGL NRQSYSCCSG DDQSNIAASH  240
SHENSHELSG GVSITSTSSL SPTEVAALNL SGKSRARRGS ATDPQSLYAR KRREKINERL  300
RVLQGLIPNG TKVDISTMLE EAVHYVKFLQ LQIKMLSSDD TWMYAPICYR GMDLGLDLKL  360
TTPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-57bHLH family protein