PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000573.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HB-PHD

Protein Properties

Length: 706aa MW: 79329.4 Da PI: 9.5446

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000573.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.3	1.7e-10	471	515	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F +n ps++ + L+k+lgL+ ++V+ WF+N R+ PCP000573.1 471 RNAVEKLRQVFSENELPSRAVKDNLSKELGLNPEKVSKWFKNARY 515 578899*************************************97 PP
2	PHD	35.6	2.2e-12	231	286	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ +++ +++++lCd +C+ +fH+kCl+++l++e++p+g w+C+ C++k PCP000573.1 231 FCAKCKLNEAfpDNDIILCDgTCNCAFHQKCLDPPLDTENIPRGeqGWFCKFCECK 286 699999955455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence
MDTLVKNMRV PGKKSSFKEY GKPGYSGSLA NLISSPKVKK GGKVPHVKKP KSKSSKTIIA 60 SALSKKRGAN SSSNASRNYD AYNKLLSRKG FRKEHDTDSS KNPSAVKLQH NKLSENGSDE 120 KGEKRRRKKK PKKDKVELDE TSRLQRRTRY LLIKIKLEQN LIDAYAGEGW KGQSREKIRP 180 EMELQRANKQ ILNCKLGIRD AIHQLDSLSS VGSIADSFIS PDGSVSHEHI FCAKCKLNEA 240 FPDNDIILCD GTCNCAFHQK CLDPPLDTEN IPRGEQGWFC KFCECKMEIL ELVNAHLGTC 300 FPMNSGWQDV FKEEAAFPHG KSSLLNPDEE WPSDDSEDDD YNPERNENSC SRGGSNDIAS 360 EEEFSTDVSV GSDVSTDGEI VSGRRQKRSV DYKKLYDEMF GKDGPLLEQI SDDEDWGPSK 420 RKRRGKESDA ASTLMTLYES ERNPDVDRTE KKSSQHSSDT QVRRSCFRIP RNAVEKLRQV 480 FSENELPSRA VKDNLSKELG LNPEKVSKWF KNARYLALKT RKGASDKDLD TFTPGISKEP 540 GYENVTGKAA DLMASDSDDD TLAETVVHSP KNVKAFRRKH PKSLSSPLRK SQQKGPSCGS 600 CAKSNEVFVL QNKDGKELSD DVSLKKLRNT RTKEKRANRI AGGGEDGCRV AELEMERLCK 660 AKGRLEYVRQ KLLKFQTVKA KQNSNISRLH EQSVIYVPIA ELKEKV

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence

MDTLVKNMRV PGKKSSFKEY GKPGYSGSLA NLISSPKVKK GGKVPHVKKP KSKSSKTIIA  60
SALSKKRGAN SSSNASRNYD AYNKLLSRKG FRKEHDTDSS KNPSAVKLQH NKLSENGSDE  120
KGEKRRRKKK PKKDKVELDE TSRLQRRTRY LLIKIKLEQN LIDAYAGEGW KGQSREKIRP  180
EMELQRANKQ ILNCKLGIRD AIHQLDSLSS VGSIADSFIS PDGSVSHEHI FCAKCKLNEA  240
FPDNDIILCD GTCNCAFHQK CLDPPLDTEN IPRGEQGWFC KFCECKMEIL ELVNAHLGTC  300
FPMNSGWQDV FKEEAAFPHG KSSLLNPDEE WPSDDSEDDD YNPERNENSC SRGGSNDIAS  360
EEEFSTDVSV GSDVSTDGEI VSGRRQKRSV DYKKLYDEMF GKDGPLLEQI SDDEDWGPSK  420
RKRRGKESDA ASTLMTLYES ERNPDVDRTE KKSSQHSSDT QVRRSCFRIP RNAVEKLRQV  480
FSENELPSRA VKDNLSKELG LNPEKVSKWF KNARYLALKT RKGASDKDLD TFTPGISKEP  540
GYENVTGKAA DLMASDSDDD TLAETVVHSP KNVKAFRRKH PKSLSSPLRK SQQKGPSCGS  600
CAKSNEVFVL QNKDGKELSD DVSLKKLRNT RTKEKRANRI AGGGEDGCRV AELEMERLCK  660
AKGRLEYVRQ KLLKFQTVKA KQNSNISRLH EQSVIYVPIA ELKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	EKRRRKKKP
2	124	130	KRRRKKK
3	125	131	RRRKKKP
4	125	133	RRRKKKPKK
5	126	156	RRKKKPKKDKVELDETSRLQRRTRYLLIKIK
6	126	132	RRRKKKP
7	127	134	RKKKPKKD
8	127	157	RRKKKPKKDKVELDETSRLQRRTRYLLIKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-154	HB-PHD family protein