PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000139.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 350aa MW: 39748.6 Da PI: 5.9358

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000139.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.1	2.7e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL++kv ++ + + ++i evd++k+ePwdLp ++k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++ PCP000139.1 16 LPPGFRFHPTDEELISHYLCPKVLDNFFCA-KAIGEVDLNKCEPWDLPWRAKMGEREWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-AKT 111 79**********************9888.89***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykgrapkgekt+Wvmheyrl PCP000139.1 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 141 **************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MENTSGFINV DEQMELPPGF RFHPTDEELI SHYLCPKVLD NFFCAKAIGE VDLNKCEPWD 60 LPWRAKMGER EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LDGKNSACNL PQTAKNEWVI CRIFQKSSGG KKIHISGLVR 180 LSPFGNELRS SLLPPLMDSP PYNSDARTTP TACETSYVSC FSDPPEDQKT QDDIMDSFNN 240 GNNHHNNDIP YACSSPSNPS SDLNSIYSNQ ITPNIGLLQH QNSVLMQDES FMRMLTENQA 300 PNLRRSAKLE FPQDAGLSID ASSVVSNREM AQDDPSYSSA PAEFDCLWNY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MENTSGFINV DEQMELPPGF RFHPTDEELI SHYLCPKVLD NFFCAKAIGE VDLNKCEPWD  60
LPWRAKMGER EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LDGKNSACNL PQTAKNEWVI CRIFQKSSGG KKIHISGLVR  180
LSPFGNELRS SLLPPLMDSP PYNSDARTTP TACETSYVSC FSDPPEDQKT QDDIMDSFNN  240
GNNHHNNDIP YACSSPSNPS SDLNSIYSNQ ITPNIGLLQH QNSVLMQDES FMRMLTENQA  300
PNLRRSAKLE FPQDAGLSID ASSVVSNREM AQDDPSYSSA PAEFDCLWNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC family protein