PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP000095.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 722aa    MW: 80153 Da    PI: 5.489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP000095.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.41.6e-151391856
                 HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  PCP000095.1  1 MFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 39
                 69**********************************998 PP
2START165.92.7e-521924192206
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                  la +  +el+k+  a+ep+W++    eng+evl  +e ++                +++ea r+s+vv+m++ +lv  +ld + +W e ++    +a+
  PCP000095.1 192 LAVSSVAELIKMCRAGEPLWSRNN--ENGKEVLNVEEHARIfppwplnlkqqpsdqCRTEATRDSVVVIMNSINLVDAFLDAN-KWMELFPsivsRAK 286
                  6778899**************999..99999999998877799999*************************************.************** PP

                  EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
        START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                  t++vis +      g lqlm+aelq+ splvp R+  f+Ry++q +++g+w+ivd  +ds  ++  +ss+ R ++ pSg+li++++ng+s+vtw+eh+
  PCP000095.1 287 TVQVISADpsgqanGSLQLMYAELQVVSPLVPtRETHFLRYCQQnEEEGSWAIVDFPIDSFHDNL-QSSFPRYKRWPSGCLIQDMPNGYSRVTWIEHA 383
                  ***************************************************************98.9******************************* PP

                  E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  + +++ +h+++ + v sg+a+ga++w+a lqrqce+
  PCP000095.1 384 EIEEKPVHQIFSHYVYSGMAFGAQRWLAVLQRQCER 419
                  **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MFKECPHPDD KQRMKLSQEL GLKPRQVKFW FQNRRTQMKA QQDRSDNAML RAENENLKNE  60
NYRLQAALSN IMCPNCKGPA MIADIGLDEQ HLRLENARLR EELERVFCLN SQYTSGQQIQ  120
TMAPGAPLMP AFNLDLDMNI YPRHFQEYPM TSSAEMIPMP LLPPPVPSHY PASAGSWGGV  180
LSDDEKSLAV ELAVSSVAEL IKMCRAGEPL WSRNNENGKE VLNVEEHARI FPPWPLNLKQ  240
QPSDQCRTEA TRDSVVVIMN SINLVDAFLD ANKWMELFPS IVSRAKTVQV ISADPSGQAN  300
GSLQLMYAEL QVVSPLVPTR ETHFLRYCQQ NEEEGSWAIV DFPIDSFHDN LQSSFPRYKR  360
WPSGCLIQDM PNGYSRVTWI EHAEIEEKPV HQIFSHYVYS GMAFGAQRWL AVLQRQCERV  420
ASLMARNISD LGVIPSPEAR KNMMNLAQRM IRTFCVSMST SNGQSWTAIS DSPDDTVRIT  480
TRKVTEPGQP IGVILTAVST TWLPYSHYRV FELLRDERRR AQPPALCQQL DVLTNGNSLH  540
EVAHIANGSH PGNCISLLRI NVSSNSSQNI EIMLQESCTD ESGSLVVYAT MDVDGIQLAM  600
SGEDPSCIPL LPLGFVIVPV QPIESSAATA ADHGTSSPDQ NQENRIMNSG CLLTVGFQVL  660
ASTSPSAKLN LASVTAMNNH LCNSVQQIIS ALGSSNICTT VTTDNVSVGV ISGGSDHPTT  720
PQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein