PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0009148.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 285aa MW: 30783.4 Da PI: 7.2746

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0009148.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.3	3.5e-15	23	83	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ +++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Pav_sc0009148.1_g040.1.mk 23 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 83 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.5	6.8e-34	22	85	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Pav_sc0009148.1_g040.1.mk 22 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 85 589***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MEDKGQDPNS PGNGSERSSE PVRSRWIPKP EQILILESIF NSGMVNPPKE ETVRIRKLLE 60 KFGTVGDANV FYWFQNRRSR SRRRQRQLQA SLEQRNNNTN GNQVGDHQMG ISSGAIQYGI 120 SCSPPAPAPA MAFGASPTSF GSCNYLVGSS SSSSSGHHLM ADHDQQTSSS VDQFFSVSGQ 180 MGFPEIEQGS GVTSVLGGGP SDTSTLHFQS GLITVFINGV PAEVPKGPLD MKSMFGQDVL 240 LVHSSGLPLP LNEFGFLAHG LQPGFKDNLS RLKLHAPTKL ELPTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	5e-64	WOX family protein