PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0008273.1_g020.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 319aa    MW: 35881.5 Da    PI: 4.5828
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0008273.1_g020.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.71.3e-0728671150
                               HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               +  +kR  +   KA+ELS LCd+ v +  ++ +gk+  ++
  Pav_sc0008273.1_g020.1.br 28 IAMAKRGSTRNEKASELSKLCDIAVYMTAVGADGKIDSWP 67
                               566777778888************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MAPPKSNPKI SVSTKTKRVS NAVKPHKIAM AKRGSTRNEK ASELSKLCDI AVYMTAVGAD  60
GKIDSWPENQ QDLKSVALKY KNLRRGLIGQ VEKGSFSAEI VEDREIGDLG FQDNCLGSKL  120
EALNERIGNV MRKMMKMRDD GNSTFMELYK NITESSVEPD AAYQQQQKSY LNLNLDPVDL  180
IIPTPKAKPN FIGQFQQEKD YLSSIHDLRV PYNGLEFDHY SVDTNDYLSL VLGDDHNDLQ  240
PQSSNYMEGL KIDGHDVVAA MPSMDATDDD IKLLLSDCDI DMMQDDVQFC VNDLIDMLLQ  300
DPQQQTHSEF KSTILDLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-08M-type_MADS family protein