PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0007634.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 287aa    MW: 31723.5 Da    PI: 8.2947
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0007634.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.3e-19142196256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ ++tkeq   Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Pav_sc0007634.1_g010.1.mk 142 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 196
                                788899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40142231191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rl+keq++lLE+sF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke 
  Pav_sc0007634.1_g010.1.mk 142 RKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEL 225
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eL+ +l
  Pav_sc0007634.1_g010.1.mk 226 QELK-AL 231
                                ***9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGFDDHPCNT GLVLGLGLTT SSPQESTSPP KAHNPSRFAN KPSPNSAPTS ATFEPSLTLG  60
LPGEPYHQLV ASNYKGGGNS HEEAIDLYRQ ASSPHSHSAV SSFSSGRVVK RERDLSSEEV  120
EVEVEKVSSR ASDEDEDGSN ARKKLRLTKE QSALLEDSFK QHSTLNPKQK QALARQLNLR  180
PRQVEVWFQN RRARTKLKQT EVDCEFLKKC CETLTDENRR LQKELQELKA LKLSQPLYMH  240
MPAATLTMCP SCERIGGVGS EGASKSPFSM APKPHFYNHF TNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-80HD-ZIP family protein