PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006499.1_g050.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 690aa MW: 75368.7 Da PI: 5.3323

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006499.1_g050.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	513	558	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Pav_sc0006499.1_g050.1.mk 513 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 558 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MTDYRIPPTM NLWTDDNASL MEAFMSSSDL TSFWAAPSAQ TTPQPAHPQA QPQSSASTSD 60 YPKAAAVAQS QPSITPFNQE TLMQRLQALI EGARESWTYA IFWQSSYDYS GGTVLGWGEG 120 FYKDERDKGK AKAKTTTSAA DQEYRKKVLR ELNSLISGAD TSADDAVVDQ EVTDTEWFFL 180 VSMTQSFVPG GGLPGQAFFH STPVWVAGTD RLAASQCERA RQGQLFGLQT MVCVPTANGV 240 VELGSTELIY QSSDLTNKVR VLFNFNNLEV GSWPMGGGGA DQGENDPSSL WINDPSSTTI 300 EVKDPVNMAP VTSAPTSTGT QPVSKPIQFE SHQPSSSSLS ENPSAIQLQQ SQLQQQQVQQ 360 QTQSFFTREL NFSDYGYDGN SVKNSNSNSH SLKPESGEIL SFGESKRSSY SANGKLFSGH 420 SQIAAAEDNN SKKKRSPPSR GSNDEGILSF SSGVILPSSG VVKSGGGGAA DSDHSDLEAS 480 VVRETDSSRV VDPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS 540 KMDKASLLGD AISYINELKA KLQTVESDKE DLQKQLESMN QDLGCKDSSS LSDQDLKMSK 600 HQASSKLIDL DIDVKIIGWD AMIRIQCCKK NHPAARLMAS LKELDLDVHH ASISVVNDLM 660 IQQATVKMGS RIYTQDQLRL ALSSIIGDSR

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MTDYRIPPTM NLWTDDNASL MEAFMSSSDL TSFWAAPSAQ TTPQPAHPQA QPQSSASTSD  60
YPKAAAVAQS QPSITPFNQE TLMQRLQALI EGARESWTYA IFWQSSYDYS GGTVLGWGEG  120
FYKDERDKGK AKAKTTTSAA DQEYRKKVLR ELNSLISGAD TSADDAVVDQ EVTDTEWFFL  180
VSMTQSFVPG GGLPGQAFFH STPVWVAGTD RLAASQCERA RQGQLFGLQT MVCVPTANGV  240
VELGSTELIY QSSDLTNKVR VLFNFNNLEV GSWPMGGGGA DQGENDPSSL WINDPSSTTI  300
EVKDPVNMAP VTSAPTSTGT QPVSKPIQFE SHQPSSSSLS ENPSAIQLQQ SQLQQQQVQQ  360
QTQSFFTREL NFSDYGYDGN SVKNSNSNSH SLKPESGEIL SFGESKRSSY SANGKLFSGH  420
SQIAAAEDNN SKKKRSPPSR GSNDEGILSF SSGVILPSSG VVKSGGGGAA DSDHSDLEAS  480
VVRETDSSRV VDPEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS  540
KMDKASLLGD AISYINELKA KLQTVESDKE DLQKQLESMN QDLGCKDSSS LSDQDLKMSK  600
HQASSKLIDL DIDVKIIGWD AMIRIQCCKK NHPAARLMAS LKELDLDVHH ASISVVNDLM  660
IQQATVKMGS RIYTQDQLRL ALSSIIGDSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	503	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	0.0	bHLH family protein