PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0006281.1_g040.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 311aa MW: 34546.2 Da PI: 5.0396

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0006281.1_g040.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.7	7.3e-14	35	72	13	50
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++R ++ KKA+ELS+LCd+ v+v+ ++ + k+ +++ Pav_sc0006281.1_g040.1.br 35 LARRMSTLKKKASELSTLCDVTVCVVSVGADSKIETWP 72 67899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MAPPQLKFKK PKKMKMKPQV LKIDANGGSV LKPALARRMS TLKKKASELS TLCDVTVCVV 60 SVGADSKIET WPENQQDAKS ILLKHKNLGK LGKKIEKGSF SARKGTDYSF LETVLEALNE 120 RIGVVMMRDG GTKTRTTSTC SFMEFYENIM GTSVLPDPPG QQQSMLLADQ VPHHHQQEDY 180 STTNSDGFYL DDLHIAAAAP SMSSIDDYVS WLMDDHNDIG LMKDYIQFCD SDLAPLPLES 240 QEQQMPLLPP AQMDTNNSDH LGWLLGGGDI GLMEDHIHFY DSDLASPQDP QQQQQPSSLQ 300 LPQTNYQLAS E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-10	M-type_MADS family protein