PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002446.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 309aa    MW: 34569.6 Da    PI: 7.2487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002446.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-19231264134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Pav_sc0002446.1_g120.1.mk 231 CMHCAVTKTPQWREGPLGPKTLCNACGVRYRSGR 264
                                99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MTAVSADVTK LTKRENISAM ASSMPTDDNF NIESFLPDEL KALDFPMEDI EECVEDEDWY  60
AQFQNLEPPS FEDLFCPRDL DGNDDMKPKN LSTSYGQTSQ RNQLPRTAAK TTQGISSIRS  120
EDLESIGSCA AQFEPKFEKR TRSKLSRSKR SSPAIFNTQF FPSTSSNSSA SENVYRWDAS  180
ESDLEGSLTE EMSNAAKRKQ KKKRNLSQLS SAEMRKLSPV EPGESRETKR CMHCAVTKTP  240
QWREGPLGPK TLCNACGVRY RSGRLFPEYR PAASPTFVAS VHSNSHKKVI ELRNKGCQEA  300
TMGILSSAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.27e-39GATA family protein