PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002233.1_g410.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 622aa MW: 72235 Da PI: 6.3164

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002233.1_g410.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.5e-21	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++ Pav_sc0002233.1_g410.1.mk 69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQF 151 59******************8888.***************************************99867789** PP FAR1 82 eleHnHela 90 ++ HnHel Pav_sc0002233.1_g410.1.mk 152 SNVHNHELL 160 *****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSIASQ LVKNDSAASE AMVSPYVGMV 60 FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR 120 DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE 180 RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE 240 NDTLELLEAC KGTKEADEDF VYDFTVDEND KTFVRFMRGR CPQTILTDLD PGLRDAIRSE 300 LPGTKHVISI WNILPKLSSW FSVSLGSRCA EFKSEFDVLY RVESTEDFEL QWNQMISMFG 360 LTTDKHIALL YSFRASWALS YMKGYFLACM ATTTYSKSVD AFLKGVFSAQ TCLRSFFEQV 420 GISANFQNQA RQEMQYMHIK TCIPIEEHVR SILTPFAFNA LQHELVLAMQ YAVSEMSNGS 480 YIVRHFKEID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRVFVVKNY FQLPDKYYLN 540 RWRKESSLDF YDDHLTRTSD DEWFQDYHCL TETVFTESSI TKERADYVRR ELTTQLTRIL 600 NEVRNMPECE GVAMDLTFSP TG

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MTSPPSKNIW IRRQQCPCGD WKCYVTYEGD SEETSSIASQ LVKNDSAASE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFAPV KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KTFVRFMRGR CPQTILTDLD PGLRDAIRSE  300
LPGTKHVISI WNILPKLSSW FSVSLGSRCA EFKSEFDVLY RVESTEDFEL QWNQMISMFG  360
LTTDKHIALL YSFRASWALS YMKGYFLACM ATTTYSKSVD AFLKGVFSAQ TCLRSFFEQV  420
GISANFQNQA RQEMQYMHIK TCIPIEEHVR SILTPFAFNA LQHELVLAMQ YAVSEMSNGS  480
YIVRHFKEID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRVFVVKNY FQLPDKYYLN  540
RWRKESSLDF YDDHLTRTSD DEWFQDYHCL TETVFTESSI TKERADYVRR ELTTQLTRIL  600
NEVRNMPECE GVAMDLTFSP TG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein