PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002207.1_g680.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 296aa    MW: 33884 Da    PI: 10.0087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002207.1_g680.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-17231021297
                                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 s+rl++p  f+++++g    + + tl+ +sg  W+v l  + +++r+++ +GW++Fvk++ L+    +vF +dg+s+f   vk
  Pav_sc0002207.1_g680.1.mk  23 FSQRLSIPPAFMDHINGR--LPPKCTLRGPSGDCWTVGL--EVRGDRFFFHEGWQRFVKDHSLEIANLLVFDYDGKSKF--DVK 100
                                4578********888655..56679**************..*********************************99988..777 PP

                                EE CS
                         B3  96 vf 97 
                                ++
  Pav_sc0002207.1_g680.1.mk 101 LY 102
                                66 PP
2B359.17.9e-191972831499
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                + + +pk+ a + g++   +k +++ed++g sW+vkl+    + ++gr ++tkGW+e ++an++  gD++vF+l++ +++ +++
  Pav_sc0002207.1_g680.1.mk 197 STFNIPKELAVATGLIR--KKSVRVEDPNGISWDVKLRLdekEHNGGRLLMTKGWSECCQANNISLGDTLVFELVNAMRGGMKM 278
                                5689**********995..557***************99877777778***************************999999*** PP

                                EEE-S CS
                         B3  95 kvfrk 99 
                                ++fr 
  Pav_sc0002207.1_g680.1.mk 279 HIFRG 283
                                **996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGRKPTKPSP KIPSFFKFLV GDFSQRLSIP PAFMDHINGR LPPKCTLRGP SGDCWTVGLE  60
VRGDRFFFHE GWQRFVKDHS LEIANLLVFD YDGKSKFDVK LYDPIGPEKE LEPAKKRRGN  120
RARVKEEIIE LDTEEPDEDS EEDARMSNIR KRKSLKSGKR IARTDGGKET SNAPIVFRSK  180
HLCFIQAMRK NRYRMVSTFN IPKELAVATG LIRKKSVRVE DPNGISWDVK LRLDEKEHNG  240
GRLLMTKGWS ECCQANNISL GDTLVFELVN AMRGGMKMHI FRGNSYVVLD DSCVKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115125KKRRGNRARVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-21B3 family protein