PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002118.1_g060.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 323aa    MW: 35662.9 Da    PI: 8.1479
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002118.1_g060.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.2e-121812092856
                                HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                                ++++ LAk+l+L  rqV vWFqNrRa+ k
  Pav_sc0002118.1_g060.1.mk 181 RQKQALAKQLNLRPRQVEVWFQNRRARTK 209
                                689************************98 PP
2HD-ZIP_I/II90.32.2e-291802442691
                HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                                +++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l
  Pav_sc0002118.1_g060.1.mk 180 KRQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLQKEVQELR-AL 244
                                589***********************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGEKDDGLGL GLSLSLGCKP NENESSLRLN LMEKPSQPMQ NHQHRTSWNE IFQFPDRNPD  60
ARSCLRGIDV NQAADFEEEN GVSSPNSTVS SLSGKRSERE PIGDENEAER TSCSHGSDDE  120
DGNGGDLSRK KLRLTKEQSL LLEDTFKEHN TLNPAKASVG KAAEPKTKTS GGLVSEQEGK  180
RQKQALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCCEKLTED NRRLQKEVQE  240
LRALKLSPQL YMQMSPPTTL TMCPSCERVA VSSSSSAAAS STAPANGQTC QSGVPNVQRP  300
IPISPWATLP IQRRPLDASA PKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2204212RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.19e-87HD-ZIP family protein