PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001900.1_g280.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 361aa MW: 39745.2 Da PI: 7.1767

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001900.1_g280.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.3	2.4e-33	16	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCaaC+++r+kC +dCv+apyf ae++++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+++ +dPv+G +g +++l Pav_sc0001900.1_g280.1.mk 16 ACAACRHQRKKCDDDCVMAPYFTAEKEEAFRAVHKIFGVSNTSKLLKKLEDKNhRGRAAESFIWEACMWKQDPVNGPLGKYRQL 99 7**********************************************66655************************** PP DUF260 84 qqqleqlkaelallkee 100 +++ + l+ l++++e+ Pav_sc0001900.1_g280.1.mk 100 ERENALLRDALQQQQEQ 116 *****9999988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MSMGSGNGVE LNSRHACAAC RHQRKKCDDD CVMAPYFTAE KEEAFRAVHK IFGVSNTSKL 60 LKKLEDKNHR GRAAESFIWE ACMWKQDPVN GPLGKYRQLE RENALLRDAL QQQQEQEEEQ 120 EKDCLALPSS TVEQESIALD QGSNNGSDMT YGYANQNLAI NGPANGTYSS LLQGQEVTER 180 KGLVDNNCVT GSNYQPAAIS QGGQQALGQG RQETQRVIGF GPPSVPFDPT IQGGNGRPMR 240 FQGQGRGIAG LDCATNSPMG PNIYGQIRGH VAFDPSQRQF GQVGAAQIGP KFSEGFPGHM 300 RAVTQIQDAG FVPYHHLLLH HQPIHMQRQG MTQAQNHHSF QQYSFNNHQS YETGQGKCLV 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MSMGSGNGVE LNSRHACAAC RHQRKKCDDD CVMAPYFTAE KEEAFRAVHK IFGVSNTSKL  60
LKKLEDKNHR GRAAESFIWE ACMWKQDPVN GPLGKYRQLE RENALLRDAL QQQQEQEEEQ  120
EKDCLALPSS TVEQESIALD QGSNNGSDMT YGYANQNLAI NGPANGTYSS LLQGQEVTER  180
KGLVDNNCVT GSNYQPAAIS QGGQQALGQG RQETQRVIGF GPPSVPFDPT IQGGNGRPMR  240
FQGQGRGIAG LDCATNSPMG PNIYGQIRGH VAFDPSQRQF GQVGAAQIGP KFSEGFPGHM  300
RAVTQIQDAG FVPYHHLLLH HQPIHMQRQG MTQAQNHHSF QQYSFNNHQS YETGQGKCLV  360
V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	7e-26	LBD family protein