PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001817.1_g050.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23864.8 Da PI: 10.5263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.7e-11 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ ErrRR riN +++Lr++lP++ K++Ka++L ++v+ +++L Pav_sc0001817.1_g050.1.mk 46 KKHSDSERRRRMRINGQYATLRTVLPNL-----IKMDKASVLAETVRQVREL 92 679************************9.....6************988877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MQSISSYYTK QISFPKGQGV FPVNTIYSKS FFKPKSKAET KVIAAKKHSD SERRRRMRIN 60 GQYATLRTVL PNLIKMDKAS VLAETVRQVR ELKKAVAEVE AACRHSDSDE CVLPGGVDKL 120 SLEQCDGEQE GLVKATLSCD DRPGLISDMT RALSSVKGRV VRAEMVIVGG RSKNVLWIQG 180 LSDGKEGMVT LRRALKVVID RPIFAGLSKR FHLPQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 5e-42 | bHLH family protein |