PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001774.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 540aa MW: 60470 Da PI: 7.1734

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001774.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6e-27	80	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA ++GF++r++ ++s+ +g+i+ rt+vC+keg+r +k++ + + r+r+ tr+gCka++ vkk + gkw+v+k+++eH Pav_sc0001774.1_g030.1.mk 80 FYNAYALRIGFRTRVNDLSRSRVDGSIIARTLVCNKEGYRVADKRE-RMSVRPRPPTRVGCKAMISVKKLSIGKWVVAKFVKEH 162 9***************************************9999.999****************************** PP FAR1 86 nHelap 91 +H+l+p Pav_sc0001774.1_g030.1.mk 163 THTLSP 168 *986 PP
2	FAR1	86	5.8e-27	371	458	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+Y+ +vGF +r+++ ++sk++g+i+ rtfvC+keg+r++++++ +++ ++ra tr+gCka++ +kk + gkw+vt++ + H Pav_sc0001774.1_g030.1.mk 371 FYNAYGMRVGFMTRMNYLSRSKHDGTIIGRTFVCNKEGYRKPDRRD-KTTIKPRAPTRVGCKAMVSIKKISIGKWVVTRFMKGH 453 9****************************************999.999****************************** PP FAR1 86 nHela 90 +H+l+ Pav_sc0001774.1_g030.1.mk 454 THALT 458 996 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MDSVFDTEAQ NGVLDNSADV ELRLNHDGAI LATCVVEEAS SLGQIEQVGQ NSSRVEQNAV 60 EGDEPYLGQE FDSEAAAHAF YNAYALRIGF RTRVNDLSRS RVDGSIIART LVCNKEGYRV 120 ADKRERMSVR PRPPTRVGCK AMISVKKLSI GKWVVAKFVK EHTHTLSPGK GKKGSNDQST 180 TDEQMKIKEL TQQLLVERKR SASYRKIIDL LFNHIEEHTQ NLSQKIQRIT DNLQEIVSSE 240 GKGKDRRNVP YLFPFAGTEL LALKQTWSSR GSDPPAFRAS EKSNDSVMDS ELDININDGV 300 LNDSSDAELK HSNDGALVGS FVEVEEMSHL GQGQDDEVTQ NPCTDGSSVA VEADEPYVGQ 360 EFDTEETAQA FYNAYGMRVG FMTRMNYLSR SKHDGTIIGR TFVCNKEGYR KPDRRDKTTI 420 KPRAPTRVGC KAMVSIKKIS IGKWVVTRFM KGHTHALTAT ANKGQKGLIA DQVPDDKTKI 480 EELTRALFLE RKRSASLREI VDILFDHIEE HTQDLSKKVQ YVVDKVKEIE SEGKKRYNLG

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MDSVFDTEAQ NGVLDNSADV ELRLNHDGAI LATCVVEEAS SLGQIEQVGQ NSSRVEQNAV  60
EGDEPYLGQE FDSEAAAHAF YNAYALRIGF RTRVNDLSRS RVDGSIIART LVCNKEGYRV  120
ADKRERMSVR PRPPTRVGCK AMISVKKLSI GKWVVAKFVK EHTHTLSPGK GKKGSNDQST  180
TDEQMKIKEL TQQLLVERKR SASYRKIIDL LFNHIEEHTQ NLSQKIQRIT DNLQEIVSSE  240
GKGKDRRNVP YLFPFAGTEL LALKQTWSSR GSDPPAFRAS EKSNDSVMDS ELDININDGV  300
LNDSSDAELK HSNDGALVGS FVEVEEMSHL GQGQDDEVTQ NPCTDGSSVA VEADEPYVGQ  360
EFDTEETAQA FYNAYGMRVG FMTRMNYLSR SKHDGTIIGR TFVCNKEGYR KPDRRDKTTI  420
KPRAPTRVGC KAMVSIKKIS IGKWVVTRFM KGHTHALTAT ANKGQKGLIA DQVPDDKTKI  480
EELTRALFLE RKRSASLREI VDILFDHIEE HTQDLSKKVQ YVVDKVKEIE SEGKKRYNLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-63	FAR1 family protein