PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001710.1_g250.1.br | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 81aa MW: 8849.39 Da PI: 8.4913 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.4 | 2.7e-15 | 1 | 50 | 18 | 67 |
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ Pav_sc0001710.1_g250.1.br 1 MAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGKG 50 59*******************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence |
MAPYFPASRY SEFQNAHKIF GVSNIQKIMA MAAPDQRQAA AESILTEGKG MQGKMILCVV 60 VLALSEVSMP KFGDLKENSI L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 4e-09 | LBD family protein |