PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G19820.1 | ||||||||
Common Name | ASL35, F6F22.15, LBD9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 14486.1 Da PI: 10.4266 | ||||||||
Description | LOB domain-containing protein 9 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.3 | 3.3e-35 | 12 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca C +++++C+k+C +apyfpae++ +++n+hklFG+sn++k+++ +++++ r++++ss+++e++a+ +dP +G +g+i+kl++q+e k l++l AT2G19820.1 12 PCALCTTKNKRCPKKCDFAPYFPAERKGEYENAHKLFGTSNIIKMMRFASKDKqRDMLASSILMEGDAWKKDPARGGFGMIQKLKWQIELRKIYLNEL 109 7**********************************************99766659****************************************999 PP DUF260 98 keel 101 ke++ AT2G19820.1 110 KEKI 113 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.149 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-29 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MDVSRVNVKR APCALCTTKN KRCPKKCDFA PYFPAERKGE YENAHKLFGT SNIIKMMRFA 60 SKDKQRDMLA SSILMEGDAW KKDPARGGFG MIQKLKWQIE LRKIYLNELK EKIKVEKEKT 120 ELRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-17 | 11 | 100 | 10 | 98 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-17 | 11 | 100 | 10 | 98 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240254477 | 0.0 | ||||
Expression Atlas | AT2G19820 | - | ||||
AtGenExpress | AT2G19820 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G19820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G19820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473868 | 0.0 | AB473868.1 Arabidopsis thaliana ASL35 mRNA for ASYMMETRIC LEAVES2-like 35 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179572.1 | 5e-88 | LOB domain-containing protein 9 | ||||
Swissprot | O82198 | 4e-89 | LBD9_ARATH; LOB domain-containing protein 9 | ||||
TrEMBL | D7L0W5 | 5e-62 | D7L0W5_ARALL; Predicted protein | ||||
STRING | AT2G19820.1 | 2e-87 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12282 | 14 | 32 |
Link Out ? help Back to Top | |
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Phytozome | AT2G19820.1 |
Entrez Gene | 816501 |
iHOP | AT2G19820 |
wikigenes | AT2G19820 |
Publications ? help Back to Top | |||
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