PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001640.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 192aa    MW: 21235 Da    PI: 8.5901
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001640.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2312.8e-7161645170
                      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 
                                 +se+vCyv+CnfCntilavsvP +sl ++vtvrCGhC++llsvn+  + q  a   + d +l+++ll  + ++++ + s  ++
  Pav_sc0001640.1_g110.1.mk   6 MASERVCYVHCNFCNTILAVSVPCNSLQNMVTVRCGHCANLLSVNMGASLQSNALPPQ-DPQLQKHLLSSEDSNKS-CGS-SSS 86 
                                579*******************************************999988887776.55666665554443332.222.233 PP

                      YABBY  89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                +++++  ++ e+    e ++ +r+ p irPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Pav_sc0001640.1_g110.1.mk  87 SKCSKFGHPFES---VELHDQTRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 164
                                344444455544...45555556566.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNMVTVRC GHCANLLSVN MGASLQSNAL  60
PPQDPQLQKH LLSSEDSNKS CGSSSSSKCS KFGHPFESVE LHDQTRISPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKAGNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGSK QPKLDQTFAG  180
GDQGTQKSSG FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-74YABBY family protein