PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001621.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 889aa MW: 98286.7 Da PI: 9.5218

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001621.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	245	265	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +fa+ G C++G++CkF H Pav_sc0001621.1_g010.1.mk 245 YCTDFAK-GKCRRGSSCKFDHH 265 5****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence
MSRSSRKRSS KRDLAEEPQF EDANVQDNGW LGKPGRPFHH KESGREWLSS ELAGSNGSKW 60 SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS 120 PGLDEWRQHR SRSPKSGWSR SLRGRSRSWS RSRSRSQSWS RSPDRGYRRE SVFLDRNRSR 180 SGVSAQLCKD FTAGRCRRAS DCQFLHEGSS NYDDSWESRH RKGGASKYSP DTGDYPLKSG 240 RSSVYCTDFA KGKCRRGSSC KFDHHRASDG YSKGSMNERE NERRKRDAST ERGADRVPHR 300 SGDIPCKFFA AGNCRNKKYC RFSHHIQARV SPERKSRDGR WGLSDAGPAW DGPKWSDTVA 360 LSDAAKLTAD NNGNISVPEL RPSAWSMDDN RWGHGLNNDN QKCADPIVIH EAAQRNEKDT 420 HLWKEDNVGA HVGLPKSRDT EKWLGDMSPD WNYTVQSSKH VGKEEHSGNA LGSEPSSQVH 480 GAASIMQPMI AERSNFLQNK DMREDGAIPL PYDDRNPIEK NASSRNDLNV SANIMPRQSF 540 DNSGQSSSAF PFSGLSTVGQ SQTLIPTHPQ GGGIVKSPQD TLSSESKSVI KLDIGDAKTS 600 LVTGIPQVPN VVGGKELAQL TNLSASLAQF LGNHPQLPQF CAVLTSNNAP SPFAKPEGSS 660 EHLSAAAIQP DPVISEKPYD PIHDSRELRN SNNPLFLLPN NAENTSVNGK VDKPSNVVSP 720 SSFPSGANGN DYLQAHNSVE PKHKNCQLSQ LEALAKSEIV KGNSEFGGQE SKNVKEESKS 780 PDIGPLEGTE KDGAEEGKKS KEVKGSRAFK FALVEFVKDL LKPTWKEGQI NKDAYKTIVK 840 KVVDKVTSTM QGANIPQTQE KIDHYLSFSK PKLTKLVQVS ADVLRCFRL

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence

MSRSSRKRSS KRDLAEEPQF EDANVQDNGW LGKPGRPFHH KESGREWLSS ELAGSNGSKW  60
SGLETNDMQR SKHDLGLASR EPLPGSRGSH KIESINKGSN RYMDDSMVWD GDGNCSTRMS  120
PGLDEWRQHR SRSPKSGWSR SLRGRSRSWS RSRSRSQSWS RSPDRGYRRE SVFLDRNRSR  180
SGVSAQLCKD FTAGRCRRAS DCQFLHEGSS NYDDSWESRH RKGGASKYSP DTGDYPLKSG  240
RSSVYCTDFA KGKCRRGSSC KFDHHRASDG YSKGSMNERE NERRKRDAST ERGADRVPHR  300
SGDIPCKFFA AGNCRNKKYC RFSHHIQARV SPERKSRDGR WGLSDAGPAW DGPKWSDTVA  360
LSDAAKLTAD NNGNISVPEL RPSAWSMDDN RWGHGLNNDN QKCADPIVIH EAAQRNEKDT  420
HLWKEDNVGA HVGLPKSRDT EKWLGDMSPD WNYTVQSSKH VGKEEHSGNA LGSEPSSQVH  480
GAASIMQPMI AERSNFLQNK DMREDGAIPL PYDDRNPIEK NASSRNDLNV SANIMPRQSF  540
DNSGQSSSAF PFSGLSTVGQ SQTLIPTHPQ GGGIVKSPQD TLSSESKSVI KLDIGDAKTS  600
LVTGIPQVPN VVGGKELAQL TNLSASLAQF LGNHPQLPQF CAVLTSNNAP SPFAKPEGSS  660
EHLSAAAIQP DPVISEKPYD PIHDSRELRN SNNPLFLLPN NAENTSVNGK VDKPSNVVSP  720
SSFPSGANGN DYLQAHNSVE PKHKNCQLSQ LEALAKSEIV KGNSEFGGQE SKNVKEESKS  780
PDIGPLEGTE KDGAEEGKKS KEVKGSRAFK FALVEFVKDL LKPTWKEGQI NKDAYKTIVK  840
KVVDKVTSTM QGANIPQTQE KIDHYLSFSK PKLTKLVQVS ADVLRCFRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-08	C3H family protein