PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001557.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 322aa    MW: 35473.7 Da    PI: 6.5237
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001557.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1796146255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp +ng  +r++lg++  +e+A  a+++a+ k++g
  Pav_sc0001557.1_g160.1.mk  96 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYEKPEDAGLAYDRAAFKMRG 146
                                69*******.***********9987..*************************98 PP
2AP225.43.5e-081982262855
                        AP2  28 r.krfslgkfgtaeeAakaaiaarkkleg 55 
                                + +r++lg++ tae+A  a+++a+ k++g
  Pav_sc0001557.1_g160.1.mk 198 NgARVWLGTYETAEDAGLAYDRAAFKMRG 226
                                339************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MYGETTLELE SDLAFLESIR HHLLDDLEPQ AVSFTGNNVP VIFPLFAMEN WWESSLKAEH  60
VDNDVQGLLG ALNDVNYVGC VVSDDKIELK EQKEWHYRGV RRRPWGKFAA EIRDPAKNGA  120
RVWLGTYEKP EDAGLAYDRA AFKMRGCKAK LNFPHLIGSS NVEPVRVTPK RRRSLDLSSS  180
SSSSDNGSPK PKLSKGGNGA RVWLGTYETA EDAGLAYDRA AFKMRGSKAK LNFPHLIGSH  240
DSEPGRVAPK RGSPEPSFSS ATSSDDGGSP TLKRRKSGVD SATKAKSEEA AEQFHVFQVD  300
SLTLDGQLLV DELYTYDGLL AI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ERF family protein