PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001461.1_g500.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 784aa MW: 88720 Da PI: 6.546

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001461.1_g500.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.5	7.7e-17	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++ C+a+l+++++ ++kw+ tk+++eH Pav_sc0001461.1_g500.1.mk 62 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CDAMLRIELKGQHKWVSTKFVKEH 131 9************************************9998777..............******************** PP FAR1 86 nHela 90 +H+l+ Pav_sc0001461.1_g500.1.mk 132 SHALV 136 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 784 aa Download sequence
MDVEVIDVEG MGHRGMADDG DAERSEGGEM NNVENSEAHD EDGISEPYVG MEFNSEEAAK 60 TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKGQH 120 KWVSTKFVKE HSHALVSPGK VHYLRPRRHF AGAAKNVVET YQGVGIVPSG VMYVSVDGNR 180 TPVEKNRVVR NTLSAEANRP VKNAVTMNQL RPCSRRRTLG KDAQNLLEYF KKMQAENPGF 240 FYAIQLDEDN HMANVFWADA RSRAAYCHFG DAVTLDTAYR VNQYRVPFAP FTGVNHHGQT 300 VLFGCALLLD ESEASFIWLF KTFLTAMNDC HPVSFMTDQD RAIQTAVSQV FPEVRHCISK 360 SHVLREGQER LAHVCQAHPY FEVELYNCIN LTETIEEFEL SWDSILDKYD LRRNDWLQSL 420 YSARAQWVPV YFRDSFSAAI SPKPNQGHDG FFDGYVNQQT TLPMFFRQYE RALENSFERE 480 IEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTFNYPE MRANCSCQMF ESSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKSGTT LDERSGELHG QDSLTLRYNN LCREAIKYAE DGATTTETFV AAMTALRDGG 660 KKVSVVKKNV AKVAPPNSQV SVTGYDDRKN STSTSDMTPL LWPRQDEVMK RFNLNDAGAP 720 AQTVSDLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSAPGNR VAVINLKILD 780 YCMA

Sequence ? help Back to Top

Protein Sequence Length: 784 aa Download sequence

MDVEVIDVEG MGHRGMADDG DAERSEGGEM NNVENSEAHD EDGISEPYVG MEFNSEEAAK  60
TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKGQH  120
KWVSTKFVKE HSHALVSPGK VHYLRPRRHF AGAAKNVVET YQGVGIVPSG VMYVSVDGNR  180
TPVEKNRVVR NTLSAEANRP VKNAVTMNQL RPCSRRRTLG KDAQNLLEYF KKMQAENPGF  240
FYAIQLDEDN HMANVFWADA RSRAAYCHFG DAVTLDTAYR VNQYRVPFAP FTGVNHHGQT  300
VLFGCALLLD ESEASFIWLF KTFLTAMNDC HPVSFMTDQD RAIQTAVSQV FPEVRHCISK  360
SHVLREGQER LAHVCQAHPY FEVELYNCIN LTETIEEFEL SWDSILDKYD LRRNDWLQSL  420
YSARAQWVPV YFRDSFSAAI SPKPNQGHDG FFDGYVNQQT TLPMFFRQYE RALENSFERE  480
IEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTFNYPE MRANCSCQMF ESSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKSGTT LDERSGELHG QDSLTLRYNN LCREAIKYAE DGATTTETFV AAMTALRDGG  660
KKVSVVKKNV AKVAPPNSQV SVTGYDDRKN STSTSDMTPL LWPRQDEVMK RFNLNDAGAP  720
AQTVSDLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSAPGNR VAVINLKILD  780
YCMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein