PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001428.1_g310.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 240aa MW: 26223.1 Da PI: 5.8167

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001428.1_g310.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Pav_sc0001428.1_g310.1.mk 74 YTCTFCRREFRSAQALGGHMNVH 96 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MAELGLLSLN ELQKLALSQQ NQNQSQLLNP SLPPKAWMWN PKPAQEPEDD SWEVRAFAED 60 TGNVMGTTWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHQSHPPI NPASVSSAST 120 SSFIIPTQEF VNANGGLCLV YQLPSPSSMN GASFNTATTL MSSSSHGVEQ SPSTLLSISP 180 NIPPHDYLAS VVPPGTNSQY CHSSKSTDDP EPSTPETEKG NFEELDLELR LGHGRPTVPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-40	C2H2 family protein