PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G17810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22280.7 Da PI: 5.0235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.4e-05 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H AT4G17810.1 46 YTCNFCRREFRSAQALGGHMNVH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-6 | 43 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-4 | 44 | 70 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-5 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0073 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence Send to blast |
MNGGAWMWNP NKIEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA 60 LGGHMNVHRR DRASSRAHQG STVAAAARSG HGGMLLNSCA PPLPTTTLII QSTASNIEGL 120 SHFYQLQNPS GIFGNSGDMV NLYGTTSFPP SNLPFSMLNS PVEVPPRLIE YSTGDDESIG 180 SMKEATGTSV DELDLELRLG HHPP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 79476963 | 0.0 | ||||
Genevisible | 245383_at | 0.0 | ||||
Expression Atlas | AT4G17810 | - | ||||
AtGenExpress | AT4G17810 | - | ||||
ATTED-II | AT4G17810 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G17810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G17810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL161547 | 0.0 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | BT010828 | 0.0 | BT010828.1 Arabidopsis thaliana At4g17810 mRNA, complete cds. | |||
GenBank | BT011301 | 0.0 | BT011301.1 Arabidopsis thaliana At4g17810 gene, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | HM453334 | 0.0 | HM453334.1 Arabidopsis lyrata palmate-like pentafoliata 1 transcription factor (PALM1) gene, complete cds. | |||
GenBank | Z97344 | 0.0 | Z97344.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_193516.2 | 1e-152 | C2H2 and C2HC zinc fingers superfamily protein | ||||
TrEMBL | A0A178V201 | 1e-151 | A0A178V201_ARATH; Uncharacterized protein | ||||
TrEMBL | E2IBP8 | 1e-151 | E2IBP8_ARALY; Palmate-like pentafoliata 1 transcription factor | ||||
TrEMBL | Q6NNI6 | 1e-151 | Q6NNI6_ARATH; At4g17810 | ||||
STRING | AT4G17810.1 | 1e-152 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5284 | 26 | 47 | Representative plant | OGRP576 | 15 | 81 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G17810.1 |
Entrez Gene | 827503 |
iHOP | AT4G17810 |
wikigenes | AT4G17810 |
Publications ? help Back to Top | |||
---|---|---|---|
|