PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g770.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 303aa    MW: 33661.7 Da    PI: 4.8288
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g770.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19e-36271172101
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ 
  Pav_sc0001405.1_g770.1.mk  27 FLTKTYQLVDDPSIDDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFSNDC 101
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                                F++g+k+ll++i+r++
  Pav_sc0001405.1_g770.1.mk 102 FRRGEKRLLCEIQRRR 117
                                **************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MAPTSVEPNG GESTSSESSQ RALPTPFLTK TYQLVDDPSI DDVISWNDDG SSFVVWNPTV  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV IPDRWEFSND CFRRGEKRLL CEIQRRRIMP  120
PAPSVVVSPM ATAAAVPNAK PMISPSNSGE EQVISSSSSP IRAPSELIDE NEKLRKENMQ  180
LTKELAEVKS LCNNIFSMVS NYACAQSESG FPDVKPLDLM PGKRFSGDGE KEEEEASPKL  240
FGVAIGAKRA RETVGDGVEE DETGLRLQQP SGGGDVKSEP LDVDRQETPW LNQRHMANQR  300
VCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-95HSF family protein