PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g450.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 433aa    MW: 47095.5 Da    PI: 7.886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g450.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08111131526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                 C+++ + G C+yGd+CkF H+
  Pav_sc0001405.1_g450.1.mk 111 VCNYWVQ-GNCSYGDKCKFLHC 131
                                7******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MDVDGGGNKR VFHRLGGPQS DPSKNQKVCF HWRAGKCNRH PCPFLHRELP PPPSQQGLNG  60
TASSKRHHAF AATTDGPSAR NRGPNNFNGG ASSTWGRTGG TRVFVRKMEK VCNYWVQGNC  120
SYGDKCKFLH CWSMGDSFSL LTQLDGHQKV VSGIALPSGS DKLYTGSKDQ TVRVWDCQSG  180
QCLGVINLGG EVGCMISEGP WVFVGIPDVV KAWNTQTNSE LSLSGPVGQV YALVVGNDLL  240
FAGTQDGSIL AWKFNAVTNC FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIRVWSLET  300
LQCIQTLTEH TSVVMSVLCW DQFLLSCSLD QQLKVWVATQ SGNLEVTYTH KEEHGLITLC  360
GMHDSEAKPV LLCACNDNTV RVYDLPAFSE RGKIFSKEEI RSIQVGPGGL FFTGDGTGQV  420
KVWKWVVEPA PTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein