PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001342.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 550aa MW: 62195.2 Da PI: 7.8097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001342.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.4	1.4e-24	95	203	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkak 65 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e+++ +++ r +r+ ++t+Cka+ Pav_sc0001342.1_g100.1.mk 95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTVevpesvsnsressicssvkRKRGRASRSWEKTDCKAC 178 5**************************************9998889***********998888899******** PP FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vk++ dg+w v ++ +eHnHe++p Pav_sc0001342.1_g100.1.mk 179 MHVKRQ-DGRWIVRSFIKEHNHEIFP 203 *9.**************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MGIDLEQPSG EYHKEDNRPS VNNIVDGRGE ENRRAIVNVT NGPVNDKENA GQNVNGRVSD 60 TRNKTVTRDE INLNSSRDSE PHDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG 120 KFIDAKFACT RYGSKRESST VEVPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH 180 VKRQDGRWIV RSFIKEHNHE IFPDQAYYFR GHRNLDLGSG DADGLHAIRR RTKKMYVNMA 240 RQSEKYEEEV KADFETWHKQ PALRSPSPFG KQMATMYTHA IFKKFQVEVL GVVACHPKKE 300 TEDGAIKTFR VQDFEEDQDF IVVWNEMTSD ISCLCHSFDD EGSLSQESYN IAFNALEEAL 360 RSCESINNSI QSVIEPISAE THGSEGVNQG NSKNKTNKKN GASKKGQVQS EPEVMTIGVQ 420 ESWQQVEQLV SRAPTLDGYF GSQQIVQGTG QPSTIASSRD HYYSNQHMQG LGQLNSIAPI 480 HDAHYITQQR LHGVGQLHFR PQSIPSCFDI PDGPVYCGTH TAARLGIKTF AFERPLSSIA 540 MHFQKWRVWR

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MGIDLEQPSG EYHKEDNRPS VNNIVDGRGE ENRRAIVNVT NGPVNDKENA GQNVNGRVSD  60
TRNKTVTRDE INLNSSRDSE PHDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG  120
KFIDAKFACT RYGSKRESST VEVPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH  180
VKRQDGRWIV RSFIKEHNHE IFPDQAYYFR GHRNLDLGSG DADGLHAIRR RTKKMYVNMA  240
RQSEKYEEEV KADFETWHKQ PALRSPSPFG KQMATMYTHA IFKKFQVEVL GVVACHPKKE  300
TEDGAIKTFR VQDFEEDQDF IVVWNEMTSD ISCLCHSFDD EGSLSQESYN IAFNALEEAL  360
RSCESINNSI QSVIEPISAE THGSEGVNQG NSKNKTNKKN GASKKGQVQS EPEVMTIGVQ  420
ESWQQVEQLV SRAPTLDGYF GSQQIVQGTG QPSTIASSRD HYYSNQHMQG LGQLNSIAPI  480
HDAHYITQQR LHGVGQLHFR PQSIPSCFDI PDGPVYCGTH TAARLGIKTF AFERPLSSIA  540
MHFQKWRVWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	5e-41	FAR1 family protein