PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G19990.1
Common NameF18F4.90, FRS1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 687aa    MW: 80312.4 Da    PI: 6.1062
Description FAR1-related sequence 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G19990.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.21.2e-2735136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                  +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g+++e+ ++            +++ r +r++++t+Cka l+vk+++dg+w+v +l++eHn
  AT4G19990.1  35 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKEDIDTglgtdgfnipqaRKRGRINRSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHN 132
                  6*******************************************999*********998889999********************************* PP

         FAR1  87 Hela 90 
                  He++
  AT4G19990.1 133 HEIF 136
                  *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2635136IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.113440476IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5450474IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-6451478IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII KASRRSRMTG  60
KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN RSSSKTDCKA FLHVKRRQDG  120
RWVVRSLVKE HNHEIFTGQA DSLRELSGRR KLEKLNGAIV KEVKSRKLED GDVERLLNFF  180
TDMQVENPFF FYSIDLSEEQ SLRNIFWVDA KAMHGCRPRV ILTKHDQMLK EAVLEVFPSS  240
RHCFYMWDTL GQMPEKLGHV IRLEKKLVDE INDAIYGSCQ SEDFEKNWWE VVDRFHMRDN  300
VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSDSVNSGLD KYIQRKTTFK AFLEQYKKMI  360
QERYEEEEKS EIETLYKQPG LKSPSPFGKQ MAEVYTREMF KKFQVEVLGG VACHPKKESE  420
EDGVNKRTFR VQDYEQNRSF VVVWNSESSE VVCSCRLFEL KGFLCRHAMI VLQMSGELSI  480
PSQYVLKRWT KDAKSREVME SDQTDVESTK AQRYKDLCLR SLKLSEEASL SEESYNAVVN  540
VLNEALRKWE NKSNLIQNLE ESESVTAQDL PIHEEQNNTY DMNKDDNVAD TGQEYSLQEV  600
WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINSMASNRN GYCSVHQNIH SLQGQSITHP  660
RLYETEQSSF RPEAMYERLQ DMVKDLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154GRRKLEKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.479520.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible254523_at0.0
Expression AtlasAT4G19990-
AtGenExpressAT4G19990-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G19990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q5UBY2
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G19990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7634120.0AY763412.1 Arabidopsis thaliana FAR1-related 1 protein (FRS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328358.10.0FAR1-related sequence 1
RefseqNP_001328360.10.0FAR1-related sequence 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLA0A1P8B4E20.0A0A1P8B4E2_ARATH; FAR1-related sequence 1
STRINGAT4G19990.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Wang H,Deng XW
    Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.
    EMBO J., 2002. 21(6): p. 1339-49
    [PMID:11889039]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]