PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001335.1_g410.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Nin-like
Protein Properties Length: 256aa    MW: 29944.1 Da    PI: 5.6645
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001335.1_g410.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.83.8e-27146195352
                     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                + ++l++++kyF+lpi++AAk+L+v+lTvLKr+CR+++I+RWPhRkiksl
  Pav_sc0001335.1_g410.1.mk 146 AALELDEIQKYFDLPITQAAKKLNVGLTVLKRRCRELNIMRWPHRKIKSL 195
                                6899********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MDSIQLQVPK IEINPHGFDS IQYYQDPFHE NVSLEEHLQL DNFFEFNSIP LEWNQNQHAH  60
MGFQGFEDLG SWDFMLDNTD FTSPCDYVVV DEKPVTTMVD SFDFSNNPTS DLDEASRMAD  120
WRIVSWAKHE EESWASNGIY NKKKSAALEL DEIQKYFDLP ITQAAKKLNV GLTVLKRRCR  180
ELNIMRWPHR KIKSLKALIE NVKGLGLTNE LKMLEEQKKL LEQLPDMELT ERAKKLRQAS  240
FKANYKMKRS LITARP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.17e-35Nin-like family protein