PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001305.1_g520.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 115aa    MW: 12901.7 Da    PI: 9.962
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001305.1_g520.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind68.61.4e-211983260
                               HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
               HSF_DNA-bind  2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                               Fl+k++++le       ++ k+++sw+++g+ f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+Y
  Pav_sc0001305.1_g520.1.mk 19 FLSKTFDLLEegaaeeGDSGKKIVSWNAEGSGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTY 83
                               9*********66555444899******************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MAATTSSGQS PRTRSPAPFL SKTFDLLEEG AAEEGDSGKK IVSWNAEGSG FIVWSPAEFS  60
ELLLPKYFKH NNFSSFIRQL NTYVSRRLFL VIQQLSSMRF ALGLSFFYSS LIKSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-26HSF family protein