PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001280.1_g480.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 661aa MW: 73785.3 Da PI: 9.2815

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001280.1_g480.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	568	617	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Pav_sc0001280.1_g480.1.mk 568 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 617 567888899***************99888889***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIRKKLEANQ IRAFEILASV AGKLLQESEH 60 PLPNDSCGKD THFIFDDTTK SKQEKGNSSK EDPCEHGSCD EQTLLCVGRM QECQQSYTLN 120 GVSHSQENFS YEINRASKSF DHSESIYSNK VFSDSPLSGD SVEEKPWGVL KRKLETGPSK 180 DTSINDERTQ ILGNSEDIMK VEGMPPELVS CGHDVKTYFS GDCKNHDPLL CHCANIKVDS 240 RDDDENCVRY AQPLSVVKEF EHPPDAGDEK INNMAASRHW REAPERRIGG YSRNEGKIRQ 300 VYRHGRTCYT HQGSQKIYPF KKRKFFNRMP LTTPDREFNC QSIFNSPDKR VNSDNYCAEI 360 GPSSSTTGGQ VPLKSSDCNV KLSIKSFKVP DLFIEIPATA TVGSLKRTVM EAVTSILGDG 420 LHVGILVQGK KVRDDNKTLL QTGISQDGKS HNLGFMLEPK RAKLKYSPRS KDPSLPSDRS 480 RELTRHSASL VSQPGTSSVS PNPPVINFGG CVKRDLNTVP SLLSTSTEKT PQASQALVAV 540 PPISMNALAV VPFHRKSGHP EYVQRRIRRP FSVPEVEALV QAVEKLGTGR WRDVKLRAFD 600 GAKHRTYVDL KDKWKTLVHT AGISPQQRRG EPVPQELLDR VLAAHACWSQ RHAKQQVKAA 660 V

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MVLQRRLDYG FNGYQVPEVP RASRSARGRG PIRKKLEANQ IRAFEILASV AGKLLQESEH  60
PLPNDSCGKD THFIFDDTTK SKQEKGNSSK EDPCEHGSCD EQTLLCVGRM QECQQSYTLN  120
GVSHSQENFS YEINRASKSF DHSESIYSNK VFSDSPLSGD SVEEKPWGVL KRKLETGPSK  180
DTSINDERTQ ILGNSEDIMK VEGMPPELVS CGHDVKTYFS GDCKNHDPLL CHCANIKVDS  240
RDDDENCVRY AQPLSVVKEF EHPPDAGDEK INNMAASRHW REAPERRIGG YSRNEGKIRQ  300
VYRHGRTCYT HQGSQKIYPF KKRKFFNRMP LTTPDREFNC QSIFNSPDKR VNSDNYCAEI  360
GPSSSTTGGQ VPLKSSDCNV KLSIKSFKVP DLFIEIPATA TVGSLKRTVM EAVTSILGDG  420
LHVGILVQGK KVRDDNKTLL QTGISQDGKS HNLGFMLEPK RAKLKYSPRS KDPSLPSDRS  480
RELTRHSASL VSQPGTSSVS PNPPVINFGG CVKRDLNTVP SLLSTSTEKT PQASQALVAV  540
PPISMNALAV VPFHRKSGHP EYVQRRIRRP FSVPEVEALV QAVEKLGTGR WRDVKLRAFD  600
GAKHRTYVDL KDKWKTLVHT AGISPQQRRG EPVPQELLDR VLAAHACWSQ RHAKQQVKAA  660
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	324	QKIYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-123	MYB_related family protein