PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001196.1_g990.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 306aa    MW: 35130.6 Da    PI: 5.6373
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001196.1_g990.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.5e-1510100299
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                 k+ +++ + + +rl++pk+f+++hg+    s ++ l+ + g + e+kl  rk+ g++ ++kGW eF k   L+ g  +vF+++
  Pav_sc0001196.1_g990.1.mk  10 MKT-ITNTNARDKRLRVPKTFMDKHGEH--LSDQIHLKLPGGLESEIKL--RKCAGEFSFEKGWPEFSKFCSLDFGSCLVFRYE 88 
                                444.4778888899***********955..8889***************..********************************* PP

                                SSSEE..EEEEE-S CS
                         B3  86 grsefelvvkvfrk 99 
                                g+s+f  +v +f++
  Pav_sc0001196.1_g990.1.mk  89 GKSKF--HVLIFDE 100
                                99999..***9986 PP
2B343.45.9e-142293051798
                                E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                 +p +f  +h       +++t +l     rsW v+l    +++ y++++GW  F kan LkegD+++F+l++r++  l v +fr
  Pav_sc0001196.1_g990.1.mk 229 HVPASFR-KHftP---GKNQTARLLV-GHRSWPVTL--IFHPRNYLFSAGWGAFEKANWLKEGDTCIFELMDRKNLALEVNIFR 305
                                4566665.44231...3445677666.569******..667777***************************99***9***9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MAAKKIPHFM KTITNTNARD KRLRVPKTFM DKHGEHLSDQ IHLKLPGGLE SEIKLRKCAG  60
EFSFEKGWPE FSKFCSLDFG SCLVFRYEGK SKFHVLIFDE SGTEIEYPTM PHIEETDEEE  120
DDDMSIKEIL EIEDDEEDND KSVESLEIET DESLEILLID EDDDDDVKSV ESFEFFPPPQ  180
EKNRRKPRSS SKASSSSSSS LRATVKAANK FVSSHPFFKI TLGPSRKAHV PASFRKHFTP  240
GKNQTARLLV GHRSWPVTLI FHPRNYLFSA GWGAFEKANW LKEGDTCIFE LMDRKNLALE  300
VNIFRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-19B3 family protein