PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001196.1_g700.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 262aa MW: 30152.2 Da PI: 5.9041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001196.1_g700.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1.1e-06	24	48	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs nL++H++tH Pav_sc0001196.1_g700.1.mk 24 FRCTydGCGKAFSLDFNLRSHMKTH 48 89**********************9 PP
2	zf-C2H2	17.8	9.3e-06	54	78	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi+ H Pav_sc0001196.1_g700.1.mk 54 HICPypDCGKRYAHEYKLKNHISAH 78 679999****************995 PP
3	zf-C2H2	14.5	0.00011	118	143	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Pav_sc0001196.1_g700.1.mk 118 YACPyeGCEKAYIHEYKLKLHLRReH 143 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MLQKFLDSSK LKRHFLIHTG ERDFRCTYDG CGKAFSLDFN LRSHMKTHSQ ENYHICPYPD 60 CGKRYAHEYK LKNHISAHHE KSAMVDVPKY ATPPAEKQIK TPKPPAGVYG SASSDRPYAC 120 PYEGCEKAYI HEYKLKLHLR REHPGHMSDE NAENAPNNAD NEMDEASDQD AYAGKRVNGK 180 SQKQNRPKPN LKFPPAKVVQ RKGSTPSPAT MNTMKKPWPV KDEVVYEEED SEETEEDRDN 240 VEDGWRYGEN NDDDDEETED ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	4e-97	C2H2 family protein