PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001196.1_g1820.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 901aa MW: 105646 Da PI: 7.2336

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001196.1_g1820.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	234	253	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Pav_sc0001196.1_g1820.1.mk 234 CPFHLKTGACRFGQRCSRVH 253 ******************99 PP
2	zf-CCCH	24.5	4.9e-08	332	359	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ Pav_sc0001196.1_g1820.1.mk 332 WKVAICGEYMKSRykTCSHGTACNFIHC 359 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence
MDLADPVAKE GGEADAEPKT ERLAEEKGTN RKEKRKAMKK IKRKQTRKEM ALKEREEEEA 60 ILNDPQELMK IKLMEQEEAE RSERERKLFE ERERAWIEAM EIKRKKQIEE EEEEEEERRM 120 KALEEEELSR KQQVENENDG NEVDDWDYIE EGPAEIIWQG NEIIVKKKRI KVPKRNTDQQ 180 SRKGDCDRPT SNPLPPQSEA FSDYKNSSMS AQQLIENVAQ QVPHFGTEQD KAHCPFHLKT 240 GACRFGQRCS RVHFYPDKSS TLLIKNMYNG PGLAWEQDEV LEVCRNGAFH LRGNVYIHYK 300 SLDSAVLAHQ SINGRYFAGK QISCEFINVT RWKVAICGEY MKSRYKTCSH GTACNFIHCF 360 RNPGGDYEWA DSDRPAPKYW VRKMVALFGY SDADEKQMVE ENFGQLRNSS KMTMADSERY 420 GLRRSRSRGR DYSSFIGSGR RYDSEDYVLK GAERQRHTGD DRHQGKTLDE DRCEENENLK 480 DYHRRKSRRC DTEFDRQLLD REEDRDRHHD HTRKSSRQRN RGHKNKTYET ESDGDLSDRA 540 RNRVTQHGCT GESSSQQRKG EFLDEYGDWQ NHNHEVDRVW SDRDKDRDAY HDNRKSSGHK 600 RKVGCPDNHN DRKNRTHDMD EEWSDSNSKG GKHHSRRKRF GHISKASEFS NHGDRTTRSC 660 SYELSHDLSE NDAERNPSHA RKRSKRLDEV SDISDEDRVP AQNLEHRHDR LSLEMREAEA 720 LVKKLKSDGT HESSSLGQDG ERYRSHDFDI RCISDVRMDK QDRWEPEDGS VEIFHNSKTK 780 AGSSESYESG RPGPYNERGE SSDFDSEDKV GQEDQYESDK VAHSKHRKSR RKSTLDDRKR 840 DSENRSLCSS QSSHRRHSNR LEATDSSEDN NESGRKHNQK HHADHRSRDH KRDHKSRKLA 900 T

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence

MDLADPVAKE GGEADAEPKT ERLAEEKGTN RKEKRKAMKK IKRKQTRKEM ALKEREEEEA  60
ILNDPQELMK IKLMEQEEAE RSERERKLFE ERERAWIEAM EIKRKKQIEE EEEEEEERRM  120
KALEEEELSR KQQVENENDG NEVDDWDYIE EGPAEIIWQG NEIIVKKKRI KVPKRNTDQQ  180
SRKGDCDRPT SNPLPPQSEA FSDYKNSSMS AQQLIENVAQ QVPHFGTEQD KAHCPFHLKT  240
GACRFGQRCS RVHFYPDKSS TLLIKNMYNG PGLAWEQDEV LEVCRNGAFH LRGNVYIHYK  300
SLDSAVLAHQ SINGRYFAGK QISCEFINVT RWKVAICGEY MKSRYKTCSH GTACNFIHCF  360
RNPGGDYEWA DSDRPAPKYW VRKMVALFGY SDADEKQMVE ENFGQLRNSS KMTMADSERY  420
GLRRSRSRGR DYSSFIGSGR RYDSEDYVLK GAERQRHTGD DRHQGKTLDE DRCEENENLK  480
DYHRRKSRRC DTEFDRQLLD REEDRDRHHD HTRKSSRQRN RGHKNKTYET ESDGDLSDRA  540
RNRVTQHGCT GESSSQQRKG EFLDEYGDWQ NHNHEVDRVW SDRDKDRDAY HDNRKSSGHK  600
RKVGCPDNHN DRKNRTHDMD EEWSDSNSKG GKHHSRRKRF GHISKASEFS NHGDRTTRSC  660
SYELSHDLSE NDAERNPSHA RKRSKRLDEV SDISDEDRVP AQNLEHRHDR LSLEMREAEA  720
LVKKLKSDGT HESSSLGQDG ERYRSHDFDI RCISDVRMDK QDRWEPEDGS VEIFHNSKTK  780
AGSSESYESG RPGPYNERGE SSDFDSEDKV GQEDQYESDK VAHSKHRKSR RKSTLDDRKR  840
DSENRSLCSS QSSHRRHSNR LEATDSSEDN NESGRKHNQK HHADHRSRDH KRDHKSRKLA  900
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-130	C3H family protein