PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001196.1_g1560.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 724aa MW: 83597.4 Da PI: 7.9138

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001196.1_g1560.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.2e-20	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevt 79 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k++ +w+vt Pav_sc0001196.1_g1560.1.mk 63 EYYSEFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTCNERKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVT 145 69***********9998877356667999*************9999***************99888889 PP FAR1 80 kleleHnHela 90 + ++HnHel Pav_sc0001196.1_g1560.1.mk 146 GFANHHNHELL 156 *******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MMSEDAGVML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTNDVIPY IGQRFSTHDA 60 AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTCN ERKPQRNRKS 120 SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEANQ VRFLPAYRTI SESDKSRILM 180 FAKTGISVQQ MMRLMELEKC VQPGYLPFTE KDVRNLLQTF RKLDPEDESI DLLRMCRNIK 240 EKDPNFKFEY TLDSDHRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI 300 NNYGMPCFFG CVLLREESLR SFSWALKAFL SFMYGRAPQT ILTDQNMFLK EAISMEMPTT 360 KHALCIWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLHSN 420 RHIVNLYGLR SLWALPFLRS HFFAGMTTIG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV 480 DFKDQAGEQQ TMQQNLQNIS LKTGAPMESH AASIFTPYAF SKLQEQLVLA AHYASFEMED 540 GFLVRHHTKA EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYLP 600 VRWRRISIPS AKLLQSAPSD HAERIQLLQN IVSTLVTESA KSRERLDIAT EQIIEDFQKC 660 HVDHPIGKFF GECTDLKIKL DRCFRQEKAV KRKVNFEESK KLKERLQALR KETAEISTEN 720 PVQA

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MMSEDAGVML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTNDVIPY IGQRFSTHDA  60
AYEYYSEFAK QCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPIKTCN ERKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEANQ VRFLPAYRTI SESDKSRILM  180
FAKTGISVQQ MMRLMELEKC VQPGYLPFTE KDVRNLLQTF RKLDPEDESI DLLRMCRNIK  240
EKDPNFKFEY TLDSDHRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DMPLGIWVGI  300
NNYGMPCFFG CVLLREESLR SFSWALKAFL SFMYGRAPQT ILTDQNMFLK EAISMEMPTT  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKS EFYRIYNLES IEDFELGWRD LVNSFGLHSN  420
RHIVNLYGLR SLWALPFLRS HFFAGMTTIG QSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAGEQQ TMQQNLQNIS LKTGAPMESH AASIFTPYAF SKLQEQLVLA AHYASFEMED  540
GFLVRHHTKA EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYLP  600
VRWRRISIPS AKLLQSAPSD HAERIQLLQN IVSTLVTESA KSRERLDIAT EQIIEDFQKC  660
HVDHPIGKFF GECTDLKIKL DRCFRQEKAV KRKVNFEESK KLKERLQALR KETAEISTEN  720
PVQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	691	703	KRKVNFEESKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein