PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G10240.1
Common NameF14N23.12, FRS11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 680aa    MW: 77731.3 Da    PI: 7.5754
Description FAR1-related sequence 11
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G10240.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.84.9e-2062155190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  +fY+++Ak++GFs+r+++++ +    +  t+r fvC + g++  ++ ++ k +r+r ++r+gC+a l+++k +   + +w+vt + ++HnHel 
  AT1G10240.1  62 EFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKTLSEGKPQRNRRSSRCGCQAYLRISKLTelgSTEWRVTGFANHHNHELL 155
                  6**************9998877356667999**************99999*******************998878999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1662155IPR004330FAR1 DNA binding domain
PfamPF105517.3E-20278367IPR018289MULE transposase domain
PfamPF044341.8E-8553587IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.742556589IPR007527Zinc finger, SWIM-type
SMARTSM005759.2E-7564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSDDPGQMLL IYDDPSDQRS LSLDDASSTE ESPDDNNLSL EAVHNAIPYL GQIFLTHDTA  60
YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKLTELGSTE WRVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF  180
SKTGISVQQM MRLLELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE  240
KDPNFKFEFT LDANDKLENI AWSYASSIQS YELFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLRDENLRS WSWALQAFTG FMNGKAPQTI LTDHNMCLKE AIAGEMPATK  360
HALCIWMVVG KFPSWFNAGL GERYNDWKAE FYRLYHLESV EEFELGWRDM VNSFGLHTNR  420
HINNLYASRS LWSLPYLRSH FLAGMTLTGR SKAINAFIQR FLSAQTRLAH FVEQVAVVVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMDEG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQVPDRYLPL  600
RWRRISTSFS KTFRSNAEDH GERVQLLQNL VSTLVSESAK SKERLDIATE QTSILLSRIR  660
EQPVSSLAIR DISSSVQRNF
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible264408_at0.0
Expression AtlasAT1G10240-
AtGenExpressAT1G10240-
ATTED-IIAT1G10240-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G10240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G54060
IntActSearch Q9SY66
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G10240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4245950.0AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.
GenBankBT0004860.0BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001321860.10.0FAR1-related sequence 11
RefseqNP_563865.10.0FAR1-related sequence 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A178WN620.0A0A178WN62_ARATH; FRS11
STRINGAT1G10240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  3. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  4. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]