PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001181.1_g200.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 740aa    MW: 82724.9 Da    PI: 6.3637
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001181.1_g200.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09362432348
                                SS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGgg........................tWktIartmg.kgRtlkqcksrwqkyl 48 
                                 WT+e+++++  a   lG                          ++k+I + m+  + t  q+ s++qky+
  Pav_sc0001181.1_g200.1.mk 362 VWTPELHLKFTAALSALGDLtvcftlkkyqvvvifnvcfldpesRPKAILKLMNvPNITVRQVASHLQKYK 432
                                7*****************77**************************************************7 PP
2G2-like31.44.1e-104064322854
                    G2-like  28 tPktilelmkvkgLtlehvkSHLQkYR 54 
                                 Pk+il+lm+v+ +t+ +v+SHLQkY+
  Pav_sc0001181.1_g200.1.mk 406 RPKAILKLMNVPNITVRQVASHLQKYK 432
                                6*************************7 PP
3Response_reg60.11.2e-20211271108
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                +l+vd + l ++ +++ le+  + +v++++ +++al ++ e++  + l++  i+mp+md l +l+ ++++e  +p+i+++++ +
  Pav_sc0001181.1_g200.1.mk  21 ILLVDHDTLSLMCIASTLEQYSF-KVTTTEMASAALSMITEQKddYKLVMANINMPDMDSLSFLRVLHKKE--IPVIFMSSEMN 101
                                89*********************.***************666656***********************988..*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                                 + a++al  Ga  fl+Kp+++e+l 
  Pav_sc0001181.1_g200.1.mk 102 VNVAKKALAEGACFFLEKPISMEDLK 127
                                ***********************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MEHMSRTETN GLPSFAHDLQ ILLVDHDTLS LMCIASTLEQ YSFKVTTTEM ASAALSMITE  60
QKDDYKLVMA NINMPDMDSL SFLRVLHKKE IPVIFMSSEM NVNVAKKALA EGACFFLEKP  120
ISMEDLKSVW QHVYRKIRTP RKYKHKPNCG TKMNSGKDCQ GIKINEAAEV LRPPLGGVKS  180
NEAGGECSVA TGHALDIDKQ NTCTLTCKAQ GASGIKRLID DKEEQEEVKK SKVNTEQTVS  240
ESINKNEEGM ENRDSNGTTG DKKPRAVWTP ELHLKFTAAL SALGDLSKSS FSANNLKFLC  300
ALWCSRASGI KRLIDDKEEQ EEVKKSKVNT EQTVSESINK NEEGMENRDS NGTTGDKKPR  360
AVWTPELHLK FTAALSALGD LTVCFTLKKY QVVVIFNVCF LDPESRPKAI LKLMNVPNIT  420
VRQVASHLQK YKNQVQRIRE TYTTSSPSSL SRLSNCINRN EFPPAKQSSL VRQYDQRTSS  480
FGVRGNRAQL DALNSFITSP IPVAGFNNHD YRRQNLYSGL SHYTNHHTNN PSVFYLRTQG  540
QFQNLNQIRE TSSFGYGAGR NEIMNQQPLG IEENRFRTSE SHFPSMNYIT PEAAASPYIS  600
GNTFQVPNEP PVMNQEQYYT SSLTGPFDSE NKNQFSTEVA RLTTEVLELV PEQIASGNAT  660
NPNKFPADFN DGSQKLDTTA GEASSPNKNQ PLSEYDELLK LLEEDPQEAS CVGSVPNAGD  720
ADRYFEWLRE TLLENSTDPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68210.11e-30ARR-B family protein