PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G68210.1 | ||||||||
Common Name | APRR6, PRR6, T22E19.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 755aa MW: 86181.8 Da PI: 4.4677 | ||||||||
Description | pseudo-response regulator 6 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.7 | 3.4e-15 | 224 | 275 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + W++e H +F+ a++ L G+e Pk+ile+m+ + Lt +v SHLQkY+ AT1G68210.1 224 KSLWNSERHMKFIAAISIL-GEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKA 275 567****************.9999***************************85 PP | |||||||
2 | Response_reg | 24.7 | 1.1e-09 | 15 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l++d + + l+++l++ +v ++d +++al ++++++ ++li+ iemp++d + +l + ++ +p i++ + + + + l a AT1G68210.1 15 ILLIDHDTASIASLTSMLQQFSK-RVMSVDVASKALSMIEKQKkeIGLIIANIEMPHIDSHSFLNALLLKD--IPLILINPEIKTKEPSDLLTKRAC 108 79999999***********7777.888888888888888666666**********************8866..999999999998988899988888 PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 l Kp++ +++ + AT1G68210.1 109 FSLDKPISNDDIKN 122 88888888888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.55E-11 | 12 | 156 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.2E-14 | 12 | 144 | No hit | No description |
PROSITE profile | PS50110 | 22.961 | 14 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.9E-7 | 15 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.06E-6 | 16 | 128 | No hit | No description |
SuperFamily | SSF46689 | 2.51E-11 | 222 | 277 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-16 | 223 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-13 | 224 | 274 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000156 | Molecular Function | phosphorelay response regulator activity | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 755 aa Download sequence Send to blast |
MAGCLVPECA DDISILLIDH DTASIASLTS MLQQFSKRVM SVDVASKALS MIEKQKKEIG 60 LIIANIEMPH IDSHSFLNAL LLKDIPLILI NPEIKTKEPS DLLTKRACFS LDKPISNDDI 120 KNMWQHVFSK KSQELKKINI TEDQENVMDK DTYQIEAFRA NLKRQRISQA SLLGRRPFID 180 TFSTYETFQK RKSIANVEWK TTPSYAIEIE NKRKEWKKSV GRRKSLWNSE RHMKFIAAIS 240 ILGEEDFRPK SILEIMNDPN LTHRQVGSHL QKYKAQIDQI SYTLPRNESR SIDKTFEYPS 300 NYKYPFKISD LTNNLIVSNS LWNSLEKKNS ASASITQFLF KKPIGEKEET MPKFHIGGKL 360 DLSNHSVHGN VLNKLSMNVN FVPSTISNNP AYNILSIDSS SIDSSSYTGL VSTGLSSENS 420 PILYGLPSND GASNTCTSQM ESERISIPQY DPNQCHPHRS ILETDVNQID LDFTSILDSF 480 DPLVDECLMK ENNRFLPNPT MNLLDTDIDK MDWVSFIENL SHHDINMNHM DWDPSTANYV 540 LPETNMNINF PEKHTNEIGW VSSQVGYVPF ENMIPSEVDI NHMGMGYSGG SIPPQEETNT 600 NNVGFVSCEI HSEIPPKTNM AILETNYSNP LDWVFPEDIT SLETNTIQKS LVSCETSYDA 660 LDNMVPLETN MEEMNDALYD ISIEDLISFD IDANEKDIFS WLEDNGFSEE NNMMESCEYH 720 NIESVNQSDD MKIDDNFDDY RECMDWINEE MNKDV |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 240254334 | 0.0 | ||||
Expression Atlas | AT1G68210 | - | ||||
AtGenExpress | AT1G68210 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | Similar to ARR response regulator proteins that function in two-component signal transduction but lacking a conserved D-D-K motif in the receiver domain |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G68210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G68210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC016447 | 0.0 | AC016447.5 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_176988.4 | 0.0 | pseudo-response regulator 6 | ||||
Swissprot | Q9C9F6 | 0.0 | APRR6_ARATH; Putative two-component response regulator-like APRR6 | ||||
TrEMBL | A0A178WAI4 | 0.0 | A0A178WAI4_ARATH; PRR6 | ||||
STRING | AT1G68210.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13685 | 14 | 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G68210.1 |
Entrez Gene | 843150 |
iHOP | AT1G68210 |
wikigenes | AT1G68210 |
Publications ? help Back to Top | |||
---|---|---|---|
|