PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001102.1_g380.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 303aa    MW: 34572.5 Da    PI: 6.0707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001102.1_g380.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131055146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +g+WT+eEde l+  vk+ G+++W++I ++  + Rt+k+c++rw +
  Pav_sc0001102.1_g380.1.mk 10 KGPWTAEEDEVLISHVKKCGPRDWSSIRSKGLLPRTGKSCRLRWIN 55
                               79*************************8876677**********87 PP
2Myb_DNA-binding45.51.8e-1466107346
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w +
  Pav_sc0001102.1_g380.1.mk  66 KFSAEEERMVIQLQAQFGNK-WAKIATYLP-GRTDNDVKNFWST 107
                                89******************.*********.***********65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MERPNANVKK GPWTAEEDEV LISHVKKCGP RDWSSIRSKG LLPRTGKSCR LRWINKLRPN  60
LKTGSKFSAE EERMVIQLQA QFGNKWAKIA TYLPGRTDND VKNFWSTRRK RFERILQKST  120
SLQSQNNKGK SPLVHHELPE VKVPPDPCSS AIEEVTSCFN NETHNCFSNS QKFRMVPLPD  180
LVKPYLLNVE AEQPILEATP LNMILPIDSP PHYSLSQLPQ PQLDLPFLSE CKELDQDPMA  240
PDLLDMFGQE VTECEIGQKF FKENAVSTKL GEVKDLSIPN FVFDDFPPEM LDYLETLTSS  300
SEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-65MYB family protein