PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001100.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

DBB

Protein Properties

Length: 239aa MW: 26178.4 Da PI: 4.5106

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001100.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Pav_sc0001100.1_g020.1.mk 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	31.1	5e-10	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k + +fC +++ l+C+dC +++H+ H Pav_sc0001100.1_g020.1.mk 53 KLPRCDICQDKAAFIFCVEDRALFCQDCDESIHSAnslsanH 94 789******************************655666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLNCL SSKLPRCDIC 60 QDKAAFIFCV EDRALFCQDC DESIHSANSL SANHQRFLAT GIRVALSSSC TKEAETSSLE 120 PPERNTQQIS TKISAPQASG VSSPWGVDDL LRLSDFESSD KKESFEFGEL EWIADMGLFG 180 EQFPQEAVAA AEVPQLPASQ PSNFASYRPP KSNGPYKKPR IEISEDDDEH FTVPDLGIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	1e-105	DBB family protein