PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001091.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 297aa    MW: 34104.4 Da    PI: 6.0788
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001091.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1461.7e-1459142190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fYn Y k+ GF vr+s++ ++ +++e ++ ++  s  g++++++ +     ++r++tr++C a++k ++++++ w+v+++e e
  Pav_sc0001091.1_g040.1.mk  59 NFYNCYTKKQGFGVRVSNTWYR-KSKERYRGKLSYSGAGFKKKTEVN-----HPRPKTRISCPAMIKFRLMDSNMWRVIEVEIE 136
                                6*****************9998.666699999********9998877.....9******************************* PP

                       FAR1  85 HnHela 90 
                                 nH ++
  Pav_sc0001091.1_g040.1.mk 137 QNHLIS 142
                                ***876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MDEVSLNTEP ASDVDADEFE IGGDCAMSDF ISQTGIIRGE NPLPPAGGME FDFYEDLYNF  60
YNCYTKKQGF GVRVSNTWYR KSKERYRGKL SYSGAGFKKK TEVNHPRPKT RISCPAMIKF  120
RLMDSNMWRV IEVEIEQNHL ISPASAKFYK SHKSVGVGTK RALQLDTAEE VQKIRLFRTV  180
IIDSEGNGNV DVDEGESGNR YDQVLQTHHQ LEAMADLGSR NSSSMLKSRC YFKLQLSKVY  240
TNDILRKFES EVEGMYSCFS TRKLNADRPV VTYIVQEQTE VDGNRREMRD YEVFLEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-35FAR1 family protein