PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001080.1_g800.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 308aa MW: 33077.8 Da PI: 9.5482

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001080.1_g800.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.1	1.8e-39	67	152	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +a+ s+s++ Pav_sc0001080.1_g800.1.mk 67 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALTAAGGSVSQQGT 150 789******************************************************************999555555555433 PP TCP 86 ss 87 s Pav_sc0001080.1_g800.1.mk 151 SL 152 33 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MDPKGSKQTQ EIPSFLSLPQ PQQQQQQQQQ QQQQQQQQPN MSENKPAEIK DFQIVIADKE 60 EGKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQA 120 EPSIIAATGT GTIPASALTA AGGSVSQQGT SLSAGLHQKI DELGGSSIGS GSRTSWAMVG 180 GNMGRPHVAT GLWPPVSSFG FQSSSGPSTT NLGSESSNYL QKIGFPGFDL PVSNMGPMSF 240 TSILGGGSNQ QLPGLELGLS QDGHIGVLNS QALSQIYQQM GHARVHQHQH QHQHQQPPAK 300 DDSQGSGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-77	TCP family protein