PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0001080.1_g580.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27281.8 Da PI: 9.8234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.8 | 1e-36 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +p+G+rFhPtdeelv +yLk+kv++ +l++ ++i+++d+++++Pw Lp + +++ yfF ++ ++ + + ++ra+ gyWk Pav_sc0001080.1_g580.1.mk 15 MPVGYRFHPTDEELVIHYLKRKVHAAPLPA-SIIPDFDVFHTHPWGLPGCGGDVREKRYFFYNQINAIE-IDDTRRAAGCGYWK 96 699***************************.89***************654444456699988888764.6789999******* PP NAM 85 atgkdkevlsk.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 gk+k++++ ++e+vg++ktLvf + +++ +kt+W+mhey+l Pav_sc0001080.1_g580.1.mk 97 PMGKEKQIVDPeSSEAVGIRKTLVFCqrkRRYHETQTKTRWFMHEYQL 144 *********9967888**********54323345667*********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MEKLPNFVIN GGVKMPVGYR FHPTDEELVI HYLKRKVHAA PLPASIIPDF DVFHTHPWGL 60 PGCGGDVREK RYFFYNQINA IEIDDTRRAA GCGYWKPMGK EKQIVDPESS EAVGIRKTLV 120 FCQRKRRYHE TQTKTRWFMH EYQLLSSQVN PTHSQASKRE LGNWVVYRVF QRKRKPQRSS 180 DIIPQPSNSK RTRTQRLVEV ITPSSSSTCS SDITHLSSNA NRLDHDQEEN SSAAADN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14000.1 | 5e-42 | NAC family protein |