PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001025.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 445aa MW: 51493.3 Da PI: 6.5806

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001025.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.4	1.6e-27	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ + Pav_sc0001025.1_g110.1.mk 120 KWTDQMVKLLITAVSYIGEDTSSDCgsggrrkystlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtS 203 7*******************99888899999999********************************************66 PP trihelix 73 sessstcpyfdql 85 ++++++ +++d + Pav_sc0001025.1_g110.1.mk 204 CQVVENQALLDVI 216 9999998887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEGHLSQGGM VPGGASYGGL DLEGSMRVQH QTQHPHTIHQ HHPHPRQGSL AHPSIHEGFP 60 LKMGTMHNCD QTISMMDYNK GERSKNSASD EDEPSYMEEG TDGHAEGNRG KKGSPWQRVK 120 WTDQMVKLLI TAVSYIGEDT SSDCGSGGRR KYSTLQKKGK WKSVSKVMAE RGFHVSPQQC 180 EDKFNDLNKR YKKLNDMLGR GTSCQVVENQ ALLDVIDYLT EKEKDDVRKI LSSKHLFYEE 240 MCSYHNGNRL HLPHDPALQK SLQRALRRDE HDNDDPRRHH HDDLDEDDQD METDEHEDFE 300 ENNASHGDNR GIYVLEDSVK RLRQGQGREE FNYGSSLNPQ DCNKSSYCHP PIPQADMNQV 360 LPDGTKAAWL QKQWIESRSL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKR DRELEKLRME 420 NERMKLENER MALELKRKEM GAGFS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEGHLSQGGM VPGGASYGGL DLEGSMRVQH QTQHPHTIHQ HHPHPRQGSL AHPSIHEGFP  60
LKMGTMHNCD QTISMMDYNK GERSKNSASD EDEPSYMEEG TDGHAEGNRG KKGSPWQRVK  120
WTDQMVKLLI TAVSYIGEDT SSDCGSGGRR KYSTLQKKGK WKSVSKVMAE RGFHVSPQQC  180
EDKFNDLNKR YKKLNDMLGR GTSCQVVENQ ALLDVIDYLT EKEKDDVRKI LSSKHLFYEE  240
MCSYHNGNRL HLPHDPALQK SLQRALRRDE HDNDDPRRHH HDDLDEDDQD METDEHEDFE  300
ENNASHGDNR GIYVLEDSVK RLRQGQGREE FNYGSSLNPQ DCNKSSYCHP PIPQADMNQV  360
LPDGTKAAWL QKQWIESRSL QLEEQKLQIQ VEMLELEKQR FKWQRFSKKR DRELEKLRME  420
NERMKLENER MALELKRKEM GAGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-170	Trihelix family protein