PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001015.1_g290.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 299aa    MW: 34975 Da    PI: 6.936
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001015.1_g290.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.54.3e-1325684790
                       FAR1 47 ktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                               k+++++++r+etrtgC a++++++ ++++w++ ++eleHnH+++
  Pav_sc0001015.1_g290.1.mk 25 KKSEANNPRPETRTGCPAMVVIRLVDSKRWRIVEVELEHNHQVS 68
                               2357789**********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MEEVCLNSEP VFEEGDEYDS AGFKKKSEAN NPRPETRTGC PAMVVIRLVD SKRWRIVEVE  60
LEHNHQVSPQ IKRFYKSHKK MILAAKSAQP LPEPVTEIHT IKLYRTPVMD VGSNGYSHFT  120
ESEVQLCKVY TKEIFKRFQL EVEGMYSCFN TRQVSVNGPI ITYIVKERVE VEGKEKEVRC  180
YEVLYETTQV DIRCICSLFN YKGYLCRHAL NVLNYNGVEE VPSRYILPRW RKDFKCRYLL  240
HHGSSNIDVY NPVYWHNHLY KLALPVAEEG AQSEEHYKTT LQALEELLNK FHLVEDTLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.14e-54FAR1 family protein