PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001014.1_g100.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 730aa MW: 83692.4 Da PI: 6.7975

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001014.1_g100.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.6e-20	53	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt Pav_sc0001014.1_g100.1.mk 53 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQIKPSEDGKMQRNRKSSRCGCQAYMRIVKRAgfdVPEWRVTG 136 6*************9998874556679***************9****************9998777789* PP FAR1 81 leleHnHela 90 +++ HnHel Pav_sc0001014.1_g100.1.mk 137 FSNIHNHELL 146 ******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK 60 QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQIKPSE DGKMQRNRKS SRCGCQAYMR 120 IVKRAGFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ 180 MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF 240 KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG 300 CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDMPQS KHAFCIWHIV 360 AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE MVNEFGLHTN KHVISLYALR 420 NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ 480 KMQRKMQRVC LKMGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE 540 EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCDVSSS 600 STNTFETATT MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIAMAL SRVKDLPRTT 660 HNAIDIAYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH 720 CSGPCCLSVQ

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF VGQRFVSQEA AYEFYCSFAK  60
QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQIKPSE DGKMQRNRKS SRCGCQAYMR  120
IVKRAGFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI STDDKSRICM FAKAGMSVRQ  180
MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI DLIAMCKKMK DENPNFKYEF  240
KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY DMLLGIWLGV DNHGMTCFFG  300
CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK EAIAVDMPQS KHAFCIWHIV  360
AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE MVNEFGLHTN KHVISLYALR  420
NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD RFVEQVADIV DYNDRVGAKQ  480
KMQRKMQRVC LKMGSPIESH AASVLTPYAF GKLQEELVLA PQYASLLVDE GCFQVRHHTE  540
EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN NCFHIPDQYL PTRWCDVSSS  600
STNTFETATT MKDNSEKIHL LESLASTLVT ESVETEDRLD AACEQIAMAL SRVKDLPRTT  660
HNAIDIAYNC PSESLILQDV EEADGIIRFT VGNSHESVTL GKLKERRPRD IVEISRKRRH  720
CSGPCCLSVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein