PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000893.1_g1250.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 606aa MW: 65242 Da PI: 9.5494

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000893.1_g1250.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pav_sc0000893.1_g1250.1.mk 80 FICEVCNKGFQREQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	13.1	0.00029	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pav_sc0000893.1_g1250.1.mk 156 WKCEKCSKRYAVQSDWKAHSKTC 178 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MAAASSSIPF FGSTSSREET QSQMTSTLQQ HSSATPSSNT TAAAAAPPPQ KKRRNQPGNP 60 NPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEPRRKV 120 YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLNT MGGQLYGHNH MSLGLSQIPS 240 LQNQTHLPNN MLRLGNAGGA KFEHLITPSN PSSFGSQAMP NSSNFFMRDI ANQQGFQDQH 300 QFPSKAALHG LMQLPDLQSN GNNNNSPSST SAANLFNLSF FSNNSTSSSL TPPDHQFSDG 360 NGGGQGFSMG AADHHNMGSA TLPSLYGNSM QHESNIAPHM SATALLQKAA QMGSTTSTES 420 SSLLRGLGNS STRAAKSGRQ LVSAPSTVGV SFSGDHHSSG GEQQHLRSSQ QVDNENHLQG 480 LMNSLANGGS SVFGGGGVHG QDHNSFGGFS SGSTGTRVNA MDQQHNNTNY DEAKLHQNLG 540 VNFGGSDKLT LDFLGVGGMV RNMSGGHGYS QRDHHQQHHG INMIGTLDPE LKSAQASQPF 600 GGTALQ

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MAAASSSIPF FGSTSSREET QSQMTSTLQQ HSSATPSSNT TAAAAAPPPQ KKRRNQPGNP  60
NPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KTTKEPRRKV  120
YLCPEPTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARHPSSLNT MGGQLYGHNH MSLGLSQIPS  240
LQNQTHLPNN MLRLGNAGGA KFEHLITPSN PSSFGSQAMP NSSNFFMRDI ANQQGFQDQH  300
QFPSKAALHG LMQLPDLQSN GNNNNSPSST SAANLFNLSF FSNNSTSSSL TPPDHQFSDG  360
NGGGQGFSMG AADHHNMGSA TLPSLYGNSM QHESNIAPHM SATALLQKAA QMGSTTSTES  420
SSLLRGLGNS STRAAKSGRQ LVSAPSTVGV SFSGDHHSSG GEQQHLRSSQ QVDNENHLQG  480
LMNSLANGGS SVFGGGGVHG QDHNSFGGFS SGSTGTRVNA MDQQHNNTNY DEAKLHQNLG  540
VNFGGSDKLT LDFLGVGGMV RNMSGGHGYS QRDHHQQHHG INMIGTLDPE LKSAQASQPF  600
GGTALQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-117	C2H2 family protein